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Adh1-ps1 alcohol dehydrogenase 1C (class I), gamma polypeptide, pseudogene 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 310902, updated on 14-Nov-2024

Summary

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Official Symbol
Adh1-ps1provided by RGD
Official Full Name
alcohol dehydrogenase 1C (class I), gamma polypeptide, pseudogene 1provided by RGD
Primary source
RGD:1595864
See related
EnsemblRapid:ENSRNOG00000065373 AllianceGenome:RGD:1595864
Gene type
pseudo
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to enable alcohol dehydrogenase (NAD+) activity and zinc ion binding activity. Predicted to be located in cytoplasm. [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Liver (RPKM 7.1) and Thymus (RPKM 0.5) See more
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Genomic context

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See Adh1-ps1 in Genome Data Viewer
Location:
2q44
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 2 NC_086020.1 (229536380..229554556)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 2 NC_051337.1 (226862836..226881171)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 2 NC_005101.4 (243615544..243634663)

Chromosome 2 - NC_086020.1Genomic Context describing neighboring genes Neighboring gene alcohol dehydrogenase 1C (class I), gamma polypeptide Neighboring gene alcohol dehydrogenase 6A (class V) Neighboring gene uncharacterized LOC108350123 Neighboring gene alcohol dehydrogenase 6 (class V) Neighboring gene uncharacterized LOC134485688

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Other Names

  • alcohol dehydrogenase 1-like

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables alcohol dehydrogenase (NAD+) activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables all-trans-retinol dehydrogenase (NAD+) activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
  
enables zinc ion binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in retinoic acid metabolic process IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in retinol metabolic process IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086020.1 Reference GRCr8

    Range
    229536380..229554556
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_005501336.2 RNA Sequence

    Related
    ENSRNOT00000098035.2
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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