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Fam83f family with sequence similarity 83, member F [ Rattus norvegicus (Norway rat) ]

Gene ID: 315145, updated on 2-Nov-2024

Summary

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Official Symbol
Fam83fprovided by RGD
Official Full Name
family with sequence similarity 83, member Fprovided by RGD
Primary source
RGD:1562089
See related
EnsemblRapid:ENSRNOG00000018330 AllianceGenome:RGD:1562089
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1562089
Summary
Predicted to enable protein kinase binding activity. Predicted to be involved in signal transduction. Orthologous to human FAM83F (family with sequence similarity 83 member F). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Kidney (RPKM 26.2), Testes (RPKM 14.9) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Fam83f in Genome Data Viewer
Location:
7q34
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 7 NC_086025.1 (114091356..114120640)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 7 NC_051342.1 (112211164..112240454)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 7 NC_005106.4 (121889157..121918772)

Chromosome 7 - NC_086025.1Genomic Context describing neighboring genes Neighboring gene ENTH domain containing 1 Neighboring gene ribosomal protein L22 like 1, pseudogene 3 Neighboring gene GRB2-related adaptor protein 2 Neighboring gene ribosomal protein L26, pseudogene 1 Neighboring gene trinucleotide repeat containing adaptor 6B Neighboring gene ribosomal protein L29, pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables protein kinase binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in signal transduction IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
protein FAM83F

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001130502.1 → NP_001123974.1  protein FAM83F

    See identical proteins and their annotated locations for NP_001123974.1

    Status: PROVISIONAL

    Source sequence(s)
    CH473950
    UniProtKB/TrEMBL
    A6HSX5, D3ZAT7
    Related
    ENSRNOP00000024835.4, ENSRNOT00000024835.7
    Conserved Domains (2) summary
    cd09186
    Location:20 → 291
    PLDc_FAM83F_N; N-terminal phospholipase D-like domain of the uncharacterized protein, Family with sequence similarity 83F
    pfam13091
    Location:150 → 287
    PLDc_2; PLD-like domain

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086025.1 Reference GRCr8

    Range
    114091356..114120640
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039079276.1 → XP_038935204.1  protein FAM83F isoform X1

    Conserved Domains (1) summary
    cl15239
    Location:35 → 169
    PLDc_SF; Catalytic domain of phospholipase D superfamily proteins
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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