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nifk nucleolar protein interacting with the FHA domain of MKI67 [ Danio rerio (zebrafish) ]

Gene ID: 317644, updated on 9-Dec-2024

Summary

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Official Symbol
nifkprovided by ZNC
Official Full Name
nucleolar protein interacting with the FHA domain of MKI67provided by ZNC
Primary source
ZFIN:ZDB-GENE-021231-4
See related
Ensembl:ENSDARG00000040666 AllianceGenome:ZFIN:ZDB-GENE-021231-4
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
cb131; fb34b01; mki67ip; mki67ipl; sb:cb131; chunp6918; wu:fb34b01
Summary
Predicted to enable RNA binding activity. Predicted to be located in nucleus. Predicted to be active in nucleolus. Is expressed in several structures, including alar plate midbrain region; brain; eye; immature eye; and segmental plate. Orthologous to human NIFK (nucleolar protein interacting with the FHA domain of MKI67). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
human mouse all
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Genomic context

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See nifk in Genome Data Viewer
Location:
chromosome: 9
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 9 NC_007120.7 (38158585..38162080)
105 previous assembly GRCz10 (GCF_000002035.5) 9 NC_007120.6 (38348803..38352285)

Chromosome 9 - NC_007120.7Genomic Context describing neighboring genes Neighboring gene calcium channel, voltage-dependent, beta 4a subunit Neighboring gene si:dkey-219c10.4 Neighboring gene small nucleolar RNA ACA64 Neighboring gene small nucleolar RNA ACA64 Neighboring gene cytoplasmic linker associated protein 1a Neighboring gene transcription factor CP2-like 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Zebrafish midbrain slow-amplifying progenitors exhibit high levels of transcripts for nucleotide and ribosome biogenesis. Recher G, et al. Development, 2013 Dec. PMID 24198278
  2. A Toolbox for Efficient Proximity-Dependent Biotinylation in Zebrafish Embryos. Rosenthal SM, et al. Mol Cell Proteomics, 2021. PMID 34332124, Free PMC Article
  3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in nucleolus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
MKI67 FHA domain-interacting nucleolar phosphoprotein
Names
etID36886.9
mki67 (FHA domain) interacting nucleolar phosphoprotein - like
nucleolar phosphoprotein NOPP34-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_173288.2 → NP_775395.2  MKI67 FHA domain-interacting nucleolar phosphoprotein

    Status: VALIDATED

    Source sequence(s)
    BX548038
    UniProtKB/Swiss-Prot
    Q6IQ65, Q8JIY8
    Related
    ENSDARP00000059548.4, ENSDART00000059549.6

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007120.7 Reference GRCz11 Primary Assembly

    Range
    38158585..38162080
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8JIY8.2 GenPept UniProtKB/Swiss-Prot:Q8JIY8

Gene LinkOut

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