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9630002D21Rik RIKEN cDNA 9630002D21 gene [ Mus musculus (house mouse) ]

Gene ID: 319560, updated on 4-Jan-2025

Summary

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Official Symbol
9630002D21Rikprovided by MGI
Official Full Name
RIKEN cDNA 9630002D21 geneprovided by MGI
Primary source
MGI:MGI:2442274
See related
AllianceGenome:MGI:2442274
Gene type
ncRNA
RefSeq status
MODEL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Is expressed in embryo. [provided by Alliance of Genome Resources, Jan 2025]
Expression
Low expression observed in reference dataset See more
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Genomic context

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See 9630002D21Rik in Genome Data Viewer
Location:
12; 12 C3
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (71624503..71765597)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (71577931..71718589)

Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 4930404H11 gene Neighboring gene predicted gene, 40439 Neighboring gene STARR-seq mESC enhancer starr_32424 Neighboring gene STARR-seq mESC enhancer starr_32425 Neighboring gene predicted gene, 46356 Neighboring gene STARR-seq mESC enhancer starr_32426 Neighboring gene UPF0538 protein C2orf76 homolog pseudogene Neighboring gene STARR-seq mESC enhancer starr_32427 Neighboring gene STARR-seq mESC enhancer starr_32428 Neighboring gene STARR-positive B cell enhancer ABC_E5334 Neighboring gene dishevelled associated activator of morphogenesis 1 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Minimal in vivo requirements for developmentally regulated cardiac long intergenic non-coding RNAs. George MR, et al. Development, 2019 Dec 9. PMID 31784461, Free PMC Article
  2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000078.7 Reference GRCm39 C57BL/6J

    Range
    71624503..71765597
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_872810.2 RNA Sequence

  2. XR_872813.2 RNA Sequence

  3. XR_872811.2 RNA Sequence

  4. XR_872808.2 RNA Sequence

  5. XR_872814.2 RNA Sequence

  6. XR_872809.2 RNA Sequence

  7. XR_872812.2 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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