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C130050O18Rik RIKEN cDNA C130050O18 gene [ Mus musculus (house mouse) ]

Gene ID: 319772, updated on 9-Aug-2024

Summary

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Official Symbol
C130050O18Rikprovided by MGI
Official Full Name
RIKEN cDNA C130050O18 geneprovided by MGI
Primary source
MGI:MGI:2442694
See related
Ensembl:ENSMUSG00000044092 AllianceGenome:MGI:2442694
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Ubiquitous expression in spleen adult (RPKM 1.7), lung adult (RPKM 1.3) and 28 other tissues See more
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Genomic context

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See C130050O18Rik in Genome Data Viewer
Location:
5 G2; 5 78.55 cM
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (139390467..139401847)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (139405129..139416092)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 3110082I17 gene Neighboring gene microRNA 339 Neighboring gene STARR-positive B cell enhancer ABC_E9657 Neighboring gene CapStarr-seq enhancer MGSCv37_chr5:139858915-139859024 Neighboring gene G protein-coupled receptor 146 Neighboring gene CapStarr-seq enhancer MGSCv37_chr5:139894778-139894979 Neighboring gene G protein-coupled estrogen receptor 1 Neighboring gene predicted gene, 26285

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Global gene expression analysis of murine limb development. Taher L, et al. PLoS One, 2011. PMID 22174793, Free PMC Article
  2. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC319772

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001384195.1 → NP_001371124.1  uncharacterized protein LOC319772

    Status: VALIDATED

    Source sequence(s)
    AC140216
    UniProtKB/TrEMBL
    Q497Y9, Q8C860
    Related
    ENSMUSP00000127769.2, ENSMUST00000163940.2

  2. NM_177000.3 → NP_795974.2  uncharacterized protein LOC319772

    See identical proteins and their annotated locations for NP_795974.2

    Status: VALIDATED

    Source sequence(s)
    AK048344, AK086625, BY199357
    Consensus CDS
    CCDS39352.1
    UniProtKB/TrEMBL
    Q497Y9, Q8C860
    Related
    ENSMUSP00000055600.9, ENSMUST00000052176.9

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    139390467..139401847
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006504709.5 → XP_006504772.1  uncharacterized protein LOC319772 isoform X2

    UniProtKB/TrEMBL
    Q8C860

  2. XM_006504711.3 → XP_006504774.1  uncharacterized protein LOC319772 isoform X4

    See identical proteins and their annotated locations for XP_006504774.1

    UniProtKB/TrEMBL
    Q8C860

  3. XM_036165206.1 → XP_036021099.1  uncharacterized protein LOC319772 isoform X3

    UniProtKB/TrEMBL
    Q8C860

  4. XM_017320924.3 → XP_017176413.1  uncharacterized protein LOC319772 isoform X1

Nucleotide Protein Strain
Heading Accession and Version

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