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D830030K20Rik RIKEN cDNA D830030K20 gene [ Mus musculus (house mouse) ]

Gene ID: 320333, updated on 17-Aug-2024

Summary

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Official Symbol
D830030K20Rikprovided by MGI
Official Full Name
RIKEN cDNA D830030K20 geneprovided by MGI
Primary source
MGI:MGI:2443830
See related
Ensembl:ENSMUSG00000096039 AllianceGenome:MGI:2443830
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Biased expression in testis adult (RPKM 1.9), CNS E18 (RPKM 1.8) and 10 other tissues See more
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Genomic context

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See D830030K20Rik in Genome Data Viewer
Location:
14 A2; 14 1.71 cM
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (19232734..19261394, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (3208493..3234562)

Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 1700110I01 gene Neighboring gene predicted gene, 46491 Neighboring gene ribosomal protein L3 pseudogene Neighboring gene ubiquitin specific peptidase 7 pseudogene Neighboring gene predicted gene, 57810 Neighboring gene predicted gene 17222 Neighboring gene predicted gene 5795 Neighboring gene predicted gene 10340

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Takusan: a large gene family that regulates synaptic activity. Tu S, et al. Neuron, 2007 Jul 5. PMID 17610818, Free PMC Article
  2. The treasury of the commons: making use of public gene expression resources to better characterize the molecular diversity of inhibitory interneurons in the cerebellar cortex. Schilling K, et al. Cerebellum, 2009 Dec. PMID 19554387
  3. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
  4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
alpha28-takusan
Names
alpha30-takusan

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001320366.1 → NP_001307295.1  alpha28-takusan

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript. Both variants 1 and 2 encode the same protein.
    Source sequence(s)
    AK082998, AK085928, BE448911, CD775025
    Consensus CDS
    CCDS36793.1
    UniProtKB/TrEMBL
    Q8BGG1
    Related
    ENSMUSP00000153088.2, ENSMUST00000225885.2
    Conserved Domains (1) summary
    pfam04822
    Location:1 → 56
    Takusan

  2. NM_177135.5 → NP_796109.1  alpha28-takusan

    See identical proteins and their annotated locations for NP_796109.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Both variants 1 and 2 encode the same protein.
    Source sequence(s)
    AK085928, CD775025
    Consensus CDS
    CCDS36793.1
    UniProtKB/TrEMBL
    Q8BGG1
    Conserved Domains (1) summary
    pfam04822
    Location:1 → 56
    Takusan

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000080.7 Reference GRCm39 C57BL/6J

    Range
    19232734..19261394 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036158671.1 → XP_036014564.1  alpha28-takusan isoform X1

    UniProtKB/TrEMBL
    Q8BGG1
    Conserved Domains (1) summary
    pfam04822
    Location:1 → 56
    Takusan

  2. XM_036158674.1 → XP_036014567.1  alpha28-takusan isoform X1

    UniProtKB/TrEMBL
    Q8BGG1
    Conserved Domains (1) summary
    pfam04822
    Location:1 → 56
    Takusan

  3. XM_036158672.1 → XP_036014565.1  alpha28-takusan isoform X1

    UniProtKB/TrEMBL
    Q8BGG1
    Conserved Domains (1) summary
    pfam04822
    Location:1 → 56
    Takusan

  4. XM_036158673.1 → XP_036014566.1  alpha28-takusan isoform X1

    UniProtKB/TrEMBL
    Q8BGG1
    Conserved Domains (1) summary
    pfam04822
    Location:1 → 56
    Takusan

  5. XM_017316345.1 → XP_017171834.1  alpha28-takusan isoform X4

  6. XM_036158675.1 → XP_036014568.1  alpha28-takusan isoform X3

  7. XM_011244802.2 → XP_011243104.1  alpha28-takusan isoform X2

Nucleotide Protein Strain
Heading Accession and Version

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