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phrf1 PHD and ring finger domains 1 [ Danio rerio (zebrafish) ]

Gene ID: 321905, updated on 9-Dec-2024

Summary

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Official Symbol
phrf1provided by ZNC
Official Full Name
PHD and ring finger domains 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-624
See related
Ensembl:ENSDARG00000075252 AllianceGenome:ZFIN:ZDB-GENE-030131-624
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fb38b02; fc78a10; wu:fb38b02; wu:fc78a10; zgc:172184
Summary
Predicted to enable metal ion binding activity. Orthologous to human PHRF1 (PHD and ring finger domains 1). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
human mouse all
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Genomic context

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See phrf1 in Genome Data Viewer
Location:
chromosome: 25
Exon count:
19
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 25 NC_007136.7 (25508492..25546186)
105 previous assembly GRCz10 (GCF_000002035.5) 25 NC_007136.6 (25413407..25450897)

Chromosome 25 - NC_007136.7Genomic Context describing neighboring genes Neighboring gene Ras association domain family member 7a Neighboring gene uncharacterized LOC137489363 Neighboring gene microRNA 210 Neighboring gene interferon regulatory factor 7 Neighboring gene hypermethylated in cancer 1 like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
PHD and RING finger domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007136.7 Reference GRCz11 Primary Assembly

    Range
    25508492..25546186
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005163099.5 → XP_005163156.1  PHD and RING finger domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8M2BA76
    Related
    ENSDARP00000125217.1, ENSDART00000150719.3
    Conserved Domains (2) summary
    cd15536
    Location:187 → 231
    PHD_PHRF1; PHD finger found in PHD and RING finger domain-containing protein 1 (PHRF1)
    pfam13639
    Location:104 → 145
    zf-RING_2; Ring finger domain

  2. XM_002666868.6 → XP_002666914.2  PHD and RING finger domain-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8M1RI60
    Conserved Domains (2) summary
    cd15536
    Location:187 → 231
    PHD_PHRF1; PHD finger found in PHD and RING finger domain-containing protein 1 (PHRF1)
    pfam13639
    Location:104 → 145
    zf-RING_2; Ring finger domain

  3. XM_068217540.1 → XP_068073641.1  PHD and RING finger domain-containing protein 1 isoform X3

  4. XM_068217541.1 → XP_068073642.1  PHD and RING finger domain-containing protein 1 isoform X4

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001114882.1: Suppressed sequence

    Description
    NM_001114882.1: This RefSeq was temporarily suppressed because the CDS was partial.
Nucleotide Protein Strain
Heading Accession and Version

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