stx5al syntaxin 5A, like [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: stx5alprovided by ZNC
Official Full Name: syntaxin 5A, likeprovided by ZNC
Primary source: ZFIN:ZDB-GENE-030131-1825
See related: Ensembl:ENSDARG00000003175 AllianceGenome:ZFIN:ZDB-GENE-030131-1825
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: zgc:73276; wu:fb81g12
Summary: Predicted to enable SNAP receptor activity and SNARE binding activity. Predicted to be involved in several processes, including endoplasmic reticulum to Golgi vesicle-mediated transport; vesicle docking; and vesicle fusion. Predicted to act upstream of or within vesicle-mediated transport. Predicted to be located in membrane. Predicted to be part of SNARE complex. Predicted to be active in Golgi membrane. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation type II. Orthologous to human STX5 (syntaxin 5). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs: all
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Genomic context

Location:: chromosome: 21

Exon count:: 12

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	21	NC_007132.7 (26536950..26554327)
105	previous assembly	GRCz10 (GCF_000002035.5)	21	NC_007132.6 (26502418..26517632)

Chromosome 21 - NC_007132.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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Gene Ontology Provided by ZFIN

Process	Evidence Code	Pubs
acts_upstream_of_or_within vesicle-mediated transport	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: syntaxin 5A, like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_199630.2 → NP_955924.2 syntaxin 5A, like

Status: VALIDATED

Source sequence(s)

CR631122

UniProtKB/TrEMBL

A0A8M1PD64, Q6PBS1

Related

ENSDARP00000114359.1, ENSDART00000146315.3

Conserved Domains (2) summary

cd15844
Location:258 → 343

SNARE_syntaxin5; SNARE motif of syntaxin 5

pfam11416
Location:49 → 69

Syntaxin-5_N; Syntaxin-5 N-terminal, Sly1p-binding domain