seta SET nuclear proto-oncogene a [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: setaprovided by ZNC
Official Full Name: SET nuclear proto-oncogene aprovided by ZNC
Primary source: ZFIN:ZDB-GENE-030131-2221
See related: Ensembl:ENSDARG00000031495 AllianceGenome:ZFIN:ZDB-GENE-030131-2221
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: wu:fb99h10; ik:tdsubc_2c6; xx:tdsubc_2c6
Summary: Predicted to enable chromatin binding activity and histone binding activity. Predicted to act upstream of or within nucleosome assembly. Predicted to be active in chromatin and nucleus. Is expressed in central nervous system; optic cup; otic vesicle; and sensory system. Human ortholog(s) of this gene implicated in autosomal dominant non-syndromic intellectual disability. Orthologous to several human genes including SET (SET nuclear proto-oncogene). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: all
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Genomic context

Location:: chromosome: 8

Exon count:: 8

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	8	NC_007119.7 (2585406..2591654, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	8	NC_007119.6 (2526863..2533111, complement)

Chromosome 8 - NC_007119.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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Markers

fb19g04.y1 (e-PCR)
- UniSTS:190268

fb99h10.x1 (e-PCR)
- UniSTS:203648

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables chromatin binding	IBA Inferred from Biological aspect of Ancestor more info
enables histone binding	IBA Inferred from Biological aspect of Ancestor more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within nucleosome assembly	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
part_of chromatin	IBA Inferred from Biological aspect of Ancestor more info
is_active_in nucleus	IBA Inferred from Biological aspect of Ancestor more info
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: SET nuclear proto-oncogene a

Names: SET translocation (myeloid leukemia-associated) A

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.