hnrnpa0a heterogeneous nuclear ribonucleoprotein A0a [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: hnrnpa0aprovided by ZNC
Official Full Name: heterogeneous nuclear ribonucleoprotein A0aprovided by ZNC
Primary source: ZFIN:ZDB-GENE-030131-2249
See related: Ensembl:ENSDARG00000089302 AllianceGenome:ZFIN:ZDB-GENE-030131-2249
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: fc01g05; zgc:77366; wu:fc01g05
Summary: Enables mRNA 3'-UTR binding activity. Predicted to be involved in 3'-UTR-mediated mRNA stabilization. Predicted to be part of ribonucleoprotein complex. Predicted to be active in nucleus. Orthologous to human HNRNPA0 (heterogeneous nuclear ribonucleoprotein A0). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 14

Exon count:: 1

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	14	NC_007125.7 (24277556..24279964)
105	previous assembly	GRCz10 (GCF_000002035.5)	14	NC_007125.6 (23980311..23982719)

Chromosome 14 - NC_007125.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

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Markers

fk11f02.x1 (e-PCR)
- UniSTS:200591

fc01g05.x1 (e-PCR)
- UniSTS:203663

fd49c06.y1 (e-PCR)
- UniSTS:195553

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables RNA binding	IEA Inferred from Electronic Annotation more info
enables mRNA 3'-UTR binding	IDA Inferred from Direct Assay more info	PubMed
enables mRNA binding	IBA Inferred from Biological aspect of Ancestor more info
enables nucleic acid binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in 3'-UTR-mediated mRNA stabilization	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
is_active_in nucleus	IBA Inferred from Biological aspect of Ancestor more info
part_of ribonucleoprotein complex	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: heterogeneous nuclear ribonucleoprotein A0a

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_212645.2 → NP_997810.2 heterogeneous nuclear ribonucleoprotein A0a

Status: VALIDATED

Source sequence(s)

BC066672, BX005228, CN506711

UniProtKB/TrEMBL

A0A8M1PHT9, F1QS28, Q6NYB0

Related

ENSDARP00000108912.2, ENSDART00000122660.3

Conserved Domains (3) summary

cd12326
Location:8 → 86

RRM1_hnRNPA0; RNA recognition motif 1 found in heterogeneous nuclear ribonucleoprotein A0 (hnRNP A0) and similar proteins

pfam11627
Location:260 → 286

HnRNPA1; Nuclear factor hnRNPA1

cl17169
Location:102 → 181

RRM_SF; RNA recognition motif (RRM) superfamily