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actr6 actin related protein 6 [ Danio rerio (zebrafish) ]

Gene ID: 324822, updated on 2-Nov-2024

Summary

Official Symbol
actr6provided by ZNC
Official Full Name
actin related protein 6provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-3543
See related
Ensembl:ENSDARG00000021370 AllianceGenome:ZFIN:ZDB-GENE-030131-3543
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:56166; wu:fc44c08
Summary
Predicted to enable nucleosome binding activity. Predicted to be part of Swr1 complex. Orthologous to human ACTR6 (actin related protein 6). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
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Genomic context

See actr6 in Genome Data Viewer
Location:
chromosome: 25
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 25 NC_007136.7 (19585318..19594063, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 25 NC_007136.6 (19487367..19496112, complement)

Chromosome 25 - NC_007136.7Genomic Context describing neighboring genes Neighboring gene si:ch211-59o9.10 Neighboring gene LYR motif containing 5b Neighboring gene synaptonemal complex protein 3 Neighboring gene G-2 and S-phase expressed 1 Neighboring gene ATPase plasma membrane Ca2+ transporting 1b

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Markers

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables nucleosome binding IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
part_of Swr1 complex IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
actin-related protein 6
Names
ARP6 actin related protein 6 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_199696.1NP_955990.1  actin-related protein 6

    See identical proteins and their annotated locations for NP_955990.1

    Status: PROVISIONAL

    Source sequence(s)
    BC045961
    UniProtKB/TrEMBL
    Q7ZV86
    Related
    ENSDARP00000005947.7, ENSDART00000003715.9
    Conserved Domains (2) summary
    smart00268
    Location:2394
    ACTIN; Actin
    COG5277
    Location:2393
    COG5277; Actin-related protein [Cytoskeleton]

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007136.7 Reference GRCz11 Primary Assembly

    Range
    19585318..19594063 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)