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ccdc102a coiled-coil domain containing 102A [ Danio rerio (zebrafish) ]

Gene ID: 325319, updated on 2-Nov-2024

Summary

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Official Symbol
ccdc102aprovided by ZNC
Official Full Name
coiled-coil domain containing 102Aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-4044
See related
Ensembl:ENSDARG00000003872 AllianceGenome:ZFIN:ZDB-GENE-030131-4044
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:77294; wu:fc66e01; si:dkey-107k2.1
Summary
Predicted to be part of myosin complex. Orthologous to human CCDC102A (coiled-coil domain containing 102A). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See ccdc102a in Genome Data Viewer
Location:
chromosome: 7
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (28724919..28837318)
105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (28453726..28566168)

Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137496095 Neighboring gene uncharacterized LOC563479 Neighboring gene docking protein 4 Neighboring gene dynein axonemal assembly factor 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
part_of myosin complex IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
coiled-coil domain-containing protein 102A

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_205552.1 → NP_991115.1  coiled-coil domain-containing protein 102A

    See identical proteins and their annotated locations for NP_991115.1

    Status: PROVISIONAL

    Source sequence(s)
    BC065950
    UniProtKB/Swiss-Prot
    Q6NZW0
    Related
    ENSDARP00000143218.1, ENSDART00000011324.9
    Conserved Domains (1) summary
    COG1196
    Location:270 → 541
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007118.7 Reference GRCz11 Primary Assembly

    Range
    28724919..28837318
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6NZW0.1 GenPept UniProtKB/Swiss-Prot:Q6NZW0

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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