U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

zgc:66447 zgc:66447 [ Danio rerio (zebrafish) ]

Gene ID: 326023, updated on 12-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
zgc:66447provided by ZNC
Official Full Name
zgc:66447provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-4748
See related
Ensembl:ENSDARG00000025577 AllianceGenome:ZFIN:ZDB-GENE-030131-4748
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fd58c02; wu:fd58c02
Summary
Predicted to be involved in cytoplasmic microtubule organization; microtubule nucleation; and positive regulation of microtubule polymerization. Predicted to colocalize with microtubule plus-end. [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See zgc:66447 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 14 NC_007125.7 (12020936..12051654, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 14 NC_007125.6 (11714925..11745640, complement)

Chromosome 14 - NC_007125.7Genomic Context describing neighboring genes Neighboring gene FERM and PDZ domain containing 3 Neighboring gene zinc finger protein 711 Neighboring gene thymosin beta 1 Neighboring gene phosphoribosyl pyrophosphate synthetase 1B

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
involved_in cytoplasmic microtubule organization IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in microtubule nucleation IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in positive regulation of microtubule polymerization IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  
colocalizes_with microtubule plus-end IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

Go to the top of the page Help
Preferred Names
SLAIN motif-containing protein-like

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_199735.1 → NP_956029.1  SLAIN motif-containing protein-like

    See identical proteins and their annotated locations for NP_956029.1

    Status: PROVISIONAL

    Source sequence(s)
    BC055660
    UniProtKB/Swiss-Prot
    A7YYH2, Q7SXC6
    Related
    ENSDARP00000032457.7, ENSDART00000029366.9
    Conserved Domains (1) summary
    pfam15301
    Location:187 → 585
    SLAIN; SLAIN motif-containing family

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007125.7 Reference GRCz11 Primary Assembly

    Range
    12020936..12051654 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005157125.5 → XP_005157182.1  SLAIN motif-containing protein-like isoform X1

    See identical proteins and their annotated locations for XP_005157182.1

    UniProtKB/TrEMBL
    A0A0R4I9B0
    Related
    ENSDARP00000152347.1, ENSDART00000193741.1
    Conserved Domains (1) summary
    pfam15301
    Location:187 → 585
    SLAIN; SLAIN motif-containing family

  2. XM_021480979.2 → XP_021336654.1  SLAIN motif-containing protein-like isoform X2

    UniProtKB/TrEMBL
    A0A8M9QGA9
    Conserved Domains (1) summary
    pfam15301
    Location:187 → 538
    SLAIN; SLAIN motif-containing family

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394896.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    133935..164330 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q7SXC6.1 GenPept UniProtKB/Swiss-Prot:Q7SXC6

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools