lrrc42 leucine rich repeat containing 42 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: lrrc42provided by ZNC
Official Full Name: leucine rich repeat containing 42provided by ZNC
Primary source: ZFIN:ZDB-GENE-030131-4992
See related: Ensembl:ENSDARG00000030591 AllianceGenome:ZFIN:ZDB-GENE-030131-4992
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: zgc:56446; zgc:77847; wu:fe17g08
Summary: Orthologous to human LRRC42 (leucine rich repeat containing 42). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 2

Exon count:: 7

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	2	NC_007113.7 (26604773..26611033)
105	previous assembly	GRCz10 (GCF_000002035.5)	2	NC_007113.6 (26949139..26955399)

Chromosome 2 - NC_007113.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

fe17g08.x1 (e-PCR)
- UniSTS:196265

fc69g01.y1 (e-PCR)
- UniSTS:194287

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables molecular_function	ND No biological Data available more info

Process	Evidence Code	Pubs
involved_in biological_process	ND No biological Data available more info

General protein information

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Preferred Names: leucine-rich repeat-containing protein 42

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_199747.2 → NP_956041.2 leucine-rich repeat-containing protein 42

Status: VALIDATED

Source sequence(s)

BC062861, BX248497

UniProtKB/Swiss-Prot

Q6P5J6, Q7ZWF1

Related

ENSDARP00000045055.5, ENSDART00000045056.6

Conserved Domains (2) summary

cd00116
Location:75 → 259

LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...

sd00034
Location:139 → 163

LRR_AMN1; leucine-rich repeat [structural motif]