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Fndc11 fibronectin type III domain containing 11 [ Mus musculus (house mouse) ]

Gene ID: 332713, updated on 9-Aug-2024

Summary

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Official Symbol
Fndc11provided by MGI
Official Full Name
fibronectin type III domain containing 11provided by MGI
Primary source
MGI:MGI:3051572
See related
Ensembl:ENSMUSG00000047841 AllianceGenome:MGI:3051572
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1700026M20Rik
Summary
Orthologous to human FNDC11 (fibronectin type III domain containing 11). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward testis adult (RPKM 102.6) See more
Orthologs
human all
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Genomic context

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See Fndc11 in Genome Data Viewer
Location:
2 H4; 2 103.63 cM
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (180854385..180864649)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (181212592..181222856)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene PTK6 protein tyrosine kinase 6 Neighboring gene predicted gene, 40033 Neighboring gene src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites Neighboring gene STARR-positive B cell enhancer ABC_E4531 Neighboring gene heterogeneous nuclear ribonucleoprotein A3 pseudogene Neighboring gene helicase with zinc finger 2, transcriptional coactivator Neighboring gene glucocorticoid modulatory element binding protein 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Genome engineering uncovers 54 evolutionarily conserved and testis-enriched genes that are not required for male fertility in mice. Miyata H, et al. Proc Natl Acad Sci U S A, 2016 Jul 12. PMID 27357688, Free PMC Article
  2. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
  4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

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Homology

Clone Names

  • MGC58365

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  

General protein information

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Preferred Names
fibronectin type III domain-containing protein 11

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001379471.1 → NP_001366400.1  fibronectin type III domain-containing protein 11 isoform a

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) repesents the longest transcript and encodes the longer isoform (a). Variants 1 and 2 both encode the same isoform (a).
    Source sequence(s)
    AL450341, AL845506
    UniProtKB/TrEMBL
    A2AS00
    Conserved Domains (1) summary
    pfam17744
    Location:1 → 317
    DUF5581; Family of unknown function (DUF5581)

  2. NM_001379472.1 → NP_001366401.1  fibronectin type III domain-containing protein 11 isoform a

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1 and 2 both encode the same isoform (a).
    Source sequence(s)
    AL845506
    UniProtKB/TrEMBL
    A2AS00
    Related
    ENSMUSP00000104463.2, ENSMUST00000108835.2
    Conserved Domains (1) summary
    pfam17744
    Location:1 → 317
    DUF5581; Family of unknown function (DUF5581)

  3. NM_199312.5 → NP_955016.1  fibronectin type III domain-containing protein 11 isoform b

    See identical proteins and their annotated locations for NP_955016.1

    Status: VALIDATED

    Source sequence(s)
    AL845506
    Consensus CDS
    CCDS17205.1
    UniProtKB/Swiss-Prot
    A2AS01, Q80WB0
    Related
    ENSMUSP00000056320.7, ENSMUST00000050026.7
    Conserved Domains (1) summary
    pfam17744
    Location:1 → 317
    DUF5581; Family of unknown function (DUF5581)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    180854385..180864649
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011239949.3 → XP_011238251.1  fibronectin type III domain-containing protein 11 isoform X2

    See identical proteins and their annotated locations for XP_011238251.1

    UniProtKB/Swiss-Prot
    A2AS01, Q80WB0
    Conserved Domains (1) summary
    pfam17744
    Location:1 → 317
    DUF5581; Family of unknown function (DUF5581)

  2. XM_036162336.1 → XP_036018229.1  fibronectin type III domain-containing protein 11 isoform X1

    UniProtKB/TrEMBL
    A2AS00
    Conserved Domains (1) summary
    pfam17744
    Location:1 → 317
    DUF5581; Family of unknown function (DUF5581)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q80WB0.1 GenPept UniProtKB/Swiss-Prot:Q80WB0

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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