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psme3ip1 proteasome activator subunit 3 interacting protein 1 [ Danio rerio (zebrafish) ]

Gene ID: 334752, updated on 2-Nov-2024

Summary

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Official Symbol
psme3ip1provided by ZNC
Official Full Name
proteasome activator subunit 3 interacting protein 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-6692
See related
Ensembl:ENSDARG00000041631 AllianceGenome:ZFIN:ZDB-GENE-030131-6692
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fa02g12; fam192a; zgc:65774; wu:fa02g12
Summary
Predicted to be active in nucleus. Orthologous to human PSME3IP1 (proteasome activator subunit 3 interacting protein 1). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See psme3ip1 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 18 NC_007129.7 (17707688..17724316, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 18 NC_007129.6 (17718622..17735299, complement)

Chromosome 18 - NC_007129.7Genomic Context describing neighboring genes Neighboring gene NLR family, CARD domain containing 5 Neighboring gene copine II Neighboring gene ring finger and SPRY domain containing 1 Neighboring gene si:ch211-216l23.2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. A Toolbox for Efficient Proximity-Dependent Biotinylation in Zebrafish Embryos. Rosenthal SM, et al. Mol Cell Proteomics, 2021. PMID 34332124, Free PMC Article
  2. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article
  3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
PSME3-interacting protein
Names
NEFA-interacting nuclear protein NIP30
family with sequence similarity 192 member A

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_199924.1 → NP_956218.1  PSME3-interacting protein

    See identical proteins and their annotated locations for NP_956218.1

    Status: PROVISIONAL

    Source sequence(s)
    BC056511
    UniProtKB/TrEMBL
    Q6PHL2
    Related
    ENSDARP00000061015.5, ENSDART00000061016.7
    Conserved Domains (1) summary
    pfam10187
    Location:8 → 108
    Nefa_Nip30_N; N-terminal domain of NEFA-interacting nuclear protein NIP30

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007129.7 Reference GRCz11 Primary Assembly

    Range
    17707688..17724316 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_068214730.1 → XP_068070831.1  PSME3-interacting protein isoform X2

  2. XM_068214729.1 → XP_068070830.1  PSME3-interacting protein isoform X1

Nucleotide Protein
Heading Accession and Version

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