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tpd52l2a tpd52 like 2a [ Danio rerio (zebrafish) ]

Gene ID: 335107, updated on 12-Sep-2024

Summary

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Official Symbol
tpd52l2aprovided by ZNC
Official Full Name
tpd52 like 2aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-7047
See related
Ensembl:ENSDARG00000027154 AllianceGenome:ZFIN:ZDB-GENE-030131-7047
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fk69c03; zgc:55624; zgc:77795; wu:fc29c04; wu:fk69c03
Summary
Predicted to be active in cytoplasm. Orthologous to several human genes including TPD52L2 (TPD52 like 2). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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See tpd52l2a in Genome Data Viewer
Location:
chromosome: 8
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 8 NC_007119.7 (23194223..23211642)
105 previous assembly GRCz10 (GCF_000002035.5) 8 NC_007119.6 (23172984..23190403)

Chromosome 8 - NC_007119.7Genomic Context describing neighboring genes Neighboring gene DnaJ (Hsp40) homolog, subfamily C, member 5aa Neighboring gene si:ch211-196c10.15 Neighboring gene pancreatic progenitor cell differentiation and proliferation factor a Neighboring gene PTK6 protein tyrosine kinase 6a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. RNA-Seq analysis in mutant zebrafish reveals role of U1C protein in alternative splicing regulation. Rösel TD, et al. EMBO J, 2011 May 18. PMID 21468032, Free PMC Article
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  5. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
tpd52 like 2a
Names
tumor protein D52-like 2a

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001328541.1 → NP_001315470.1  tpd52 like 2a isoform 2

    Status: VALIDATED

    Source sequence(s)
    CR759927, EH435837, EH612774
    UniProtKB/TrEMBL
    A0A8M1P523, E9QF87
    Related
    ENSDARP00000119359.1, ENSDART00000144855.2
    Conserved Domains (1) summary
    pfam04201
    Location:36 → 198
    TPD52; Tumour protein D52 family

  2. NM_001328542.1 → NP_001315471.1  tpd52 like 2a isoform 3

    Status: VALIDATED

    Source sequence(s)
    CR759927, EH435837, EH450192, EH612774
    UniProtKB/TrEMBL
    A0A8M1PA60, E9QG97
    Related
    ENSDARP00000120448.1, ENSDART00000137815.3
    Conserved Domains (1) summary
    pfam04201
    Location:36 → 195
    TPD52; Tumour protein D52 family

  3. NM_001328543.1 → NP_001315472.1  tpd52 like 2a isoform 4

    Status: VALIDATED

    Source sequence(s)
    CR759927, EH435837, EH612774
    UniProtKB/TrEMBL
    A0A2R8QN88, A0A8M1P413
    Related
    ENSDARP00000157009.1, ENSDART00000186842.1

  4. NM_212733.2 → NP_997898.1  tpd52 like 2a isoform 1

    See identical proteins and their annotated locations for NP_997898.1

    Status: VALIDATED

    Source sequence(s)
    CR759927, EH435837, EH612774
    UniProtKB/TrEMBL
    Q6NX04, Q803K5
    Related
    ENSDARP00000038087.6, ENSDART00000028946.8
    Conserved Domains (1) summary
    pfam04201
    Location:36 → 175
    TPD52; Tumour protein D52 family

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007119.7 Reference GRCz11 Primary Assembly

    Range
    23194223..23211642
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005167010.5 → XP_005167067.1  tpd52 like 2a isoform X1

    UniProtKB/TrEMBL
    A0A8M2BEH5
    Related
    ENSDARP00000115292.1, ENSDART00000136914.3
    Conserved Domains (1) summary
    pfam04201
    Location:36 → 218
    TPD52; Tumour protein D52 family

  2. XM_009303929.4 → XP_009302204.1  tpd52 like 2a isoform X3

    UniProtKB/TrEMBL
    A0A8M3B1Z0
    Conserved Domains (1) summary
    pfam04201
    Location:36 → 203
    TPD52; Tumour protein D52 family

  3. XM_021478189.2 → XP_021333864.1  tpd52 like 2a isoform X2

    UniProtKB/TrEMBL
    A0A8M9Q9I8
    Conserved Domains (1) summary
    pfam04201
    Location:36 → 210
    TPD52; tumor protein D52 family

  4. XM_068222874.1 → XP_068078975.1  tpd52 like 2a isoform X4

Nucleotide Protein Strain
Heading Accession and Version

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