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prrt4b proline rich transmembrane protein 4b [ Danio rerio (zebrafish) ]

Gene ID: 335883, updated on 2-Nov-2024

Summary

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Official Symbol
prrt4bprovided by ZNC
Official Full Name
proline rich transmembrane protein 4bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-7826
See related
Ensembl:ENSDARG00000099812 AllianceGenome:ZFIN:ZDB-GENE-030131-7826
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fj35h06; wu:fj35h06; si:dkey-31f5.11
Summary
Predicted to be located in membrane. Orthologous to human PRRT4 (proline rich transmembrane protein 4). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See prrt4b in Genome Data Viewer
Location:
chromosome: 4
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 4 NC_007115.7 (18985529..19016126, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 4 NC_007115.6 (18996556..19027365, complement)

Chromosome 4 - NC_007115.7Genomic Context describing neighboring genes Neighboring gene RAP1B, member of RAS oncogene family Neighboring gene IMP (inosine 5'-monophosphate) dehydrogenase 1b Neighboring gene microRNA 129-1 Neighboring gene leptin b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
proline rich transmembrane protein 4b; proline-rich transmembrane protein 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007115.7 Reference GRCz11 Primary Assembly

    Range
    18985529..19016126 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005164785.5 → XP_005164842.1  proline-rich transmembrane protein 4

    UniProtKB/TrEMBL
    A0A0R4IBE2, A0A8M2BBY6
    Related
    ENSDARP00000137656.1, ENSDART00000166160.2
    Conserved Domains (1) summary
    PRK08581
    Location:72 → 404
    PRK08581; N-acetylmuramoyl-L-alanine amidase; Validated
Nucleotide Protein Strain
Heading Accession and Version

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