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mrpl3 mitochondrial ribosomal protein L3 [ Danio rerio (zebrafish) ]

Gene ID: 336283, updated on 4-Jan-2025

Summary

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Official Symbol
mrpl3provided by ZNC
Official Full Name
mitochondrial ribosomal protein L3provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-8227
See related
Ensembl:ENSDARG00000103318 AllianceGenome:ZFIN:ZDB-GENE-030131-8227
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fj61d01; zgc:66423; wu:fj61d01
Summary
Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of mitochondrial large ribosomal subunit. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 9. Orthologous to human MRPL3 (mitochondrial ribosomal protein L3). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
human mouse all
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Genomic context

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See mrpl3 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 19 NC_007130.7 (19193893..19217289)
105 previous assembly GRCz10 (GCF_000002035.5) 19 NC_007130.6 (19620901..19644336)

Chromosome 19 - NC_007130.7Genomic Context describing neighboring genes Neighboring gene dynein, cytoplasmic 1, light intermediate chain 1 Neighboring gene copine IVb Neighboring gene uncharacterized LOC110438147 Neighboring gene uncharacterized LOC137488503 Neighboring gene protein tyrosine phosphatase, non-receptor type 23, b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables structural constituent of ribosome IBA
Inferred from Biological aspect of Ancestor
more info
  
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within translation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of mitochondrial large ribosomal subunit IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
  
located_in ribosome IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
large ribosomal subunit protein uL3m

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_200007.1 → NP_956301.1  large ribosomal subunit protein uL3m

    See identical proteins and their annotated locations for NP_956301.1

    Status: PROVISIONAL

    Source sequence(s)
    BC055650
    UniProtKB/TrEMBL
    Q7SXD6
    Conserved Domains (1) summary
    PRK00001
    Location:70 → 278
    rplC; 50S ribosomal protein L3; Validated

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007130.7 Reference GRCz11 Primary Assembly

    Range
    19193893..19217289
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005159511.3 → XP_005159568.1  large ribosomal subunit protein uL3m isoform X1

    UniProtKB/TrEMBL
    A0A0R4IY00, A0A8M2B6E9
    Related
    ENSDARP00000141505.1, ENSDART00000161570.2
    Conserved Domains (1) summary
    PRK00001
    Location:96 → 304
    rplC; 50S ribosomal protein L3; Validated
Nucleotide Protein
Heading Accession and Version

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