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taf1c TATA-box binding protein associated factor, RNA polymerase I subunit C [ Danio rerio (zebrafish) ]

Gene ID: 336342, updated on 14-Nov-2024

Summary

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Official Symbol
taf1cprovided by ZNC
Official Full Name
TATA-box binding protein associated factor, RNA polymerase I subunit Cprovided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-8286
See related
Ensembl:ENSDARG00000096310 AllianceGenome:ZFIN:ZDB-GENE-030131-8286
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fj64h06; wu:fj64h06
Summary
Predicted to enable RNA polymerase I core promoter sequence-specific DNA binding activity. Predicted to act upstream of or within transcription by RNA polymerase I. Predicted to be active in fibrillar center. Orthologous to human TAF1C (TATA-box binding protein associated factor, RNA polymerase I subunit C). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See taf1c in Genome Data Viewer
Location:
chromosome: 21
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 21 NC_007132.7 (5801344..5838539, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 21 NC_007132.6 (5695981..5731611, complement)

Chromosome 21 - NC_007132.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137488778 Neighboring gene starch binding domain 1 Neighboring gene shroom family member 3 Neighboring gene cyclin I Neighboring gene cyclin G2 Neighboring gene proteinase-activated receptor 3 Neighboring gene WD repeat domain 38

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
acts_upstream_of_or_within transcription by RNA polymerase I IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
TATA box-binding protein-associated factor RNA polymerase I subunit C; TATA-box binding protein associated factor, RNA polymerase I subunit C

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007132.7 Reference GRCz11 Primary Assembly

    Range
    5801344..5838539 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002665873.7 → XP_002665919.3  TATA box-binding protein-associated factor RNA polymerase I subunit C

    UniProtKB/TrEMBL
    A0A8M1RRS6
    Related
    ENSDARP00000125622.1, ENSDART00000150914.3
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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