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cxl34c CX chemokine ligand 34c [ Danio rerio (zebrafish) ]

Gene ID: 336400, updated on 2-Nov-2024

Summary

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Official Symbol
cxl34cprovided by ZNC
Official Full Name
CX chemokine ligand 34cprovided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-8344
See related
Ensembl:ENSDARG00000096664 AllianceGenome:ZFIN:ZDB-GENE-030131-8344
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
wu:fb09d09; si:ch211-125g7.3
Summary
Predicted to enable CCR chemokine receptor binding activity and chemokine activity. Predicted to be involved in several processes, including antimicrobial humoral immune response mediated by antimicrobial peptide; cell chemotaxis; and chemokine-mediated signaling pathway. Predicted to be active in extracellular space. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See cxl34c in Genome Data Viewer
Location:
chromosome: 12
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 12 NC_007123.7 (13152517..13155653, complement)

Chromosome 12 - NC_007123.7Genomic Context describing neighboring genes Neighboring gene coiled-coil serine-rich protein 2b Neighboring gene PAT1 homolog 2 Neighboring gene calymmin Neighboring gene progestin and adipoQ receptor family member IVb Neighboring gene pelota mRNA surveillance and ribosome rescue factor

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_007123.7 Chromosome 12 Reference GRCz11 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Extensive expansion and diversification of the chemokine gene family in zebrafish: identification of a novel chemokine subfamily CX. Nomiyama H, et al. BMC Genomics, 2008 May 15. PMID 18482437, Free PMC Article
  2. Systematic classification of vertebrate chemokines based on conserved synteny and evolutionary history. Nomiyama H, et al. Genes Cells, 2013 Jan. PMID 23145839, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

General protein information

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Preferred Names
CX chemokine ligand 34c
Names
CXL-chr12a

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001423235.1 → NP_001410164.1  CX chemokine ligand 34c precursor

    Status: VALIDATED

    Source sequence(s)
    CT954256
    Related
    ENSDARP00000126667.1, ENSDART00000152467.2

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007123.7 Reference GRCz11 Primary Assembly

    Range
    13152517..13155653 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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