U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ftr82 finTRIM family, member 82 [ Danio rerio (zebrafish) ]

Gene ID: 338307, updated on 2-Nov-2024

Summary

Go to the top of the page Help
Official Symbol
ftr82provided by ZNC
Official Full Name
finTRIM family, member 82provided by ZNC
Primary source
ZFIN:ZDB-GENE-030219-207
See related
Ensembl:ENSDARG00000055647 AllianceGenome:ZFIN:ZDB-GENE-030219-207
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
cb579; sb:cb579; id:ibd1340; wu:fb99c05; zgc:153276; si:dkey-252h13.6
Summary
Predicted to enable zinc ion binding activity. Acts upstream of or within vasculature development. Predicted to be located in cytoplasm. Is expressed in several structures, including cardiovascular system; digestive system; head mesenchyme; mesoderm; and pleuroperitoneal region. Orthologous to human TRIM29 (tripartite motif containing 29). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See ftr82 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 5 NC_007116.7 (30707129..30715229, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 5 NC_007116.6 (30106976..30115076, complement)

Chromosome 5 - NC_007116.7Genomic Context describing neighboring genes Neighboring gene ATP synthase, H+ transporting, mitochondrial F0 complex, subunit g Neighboring gene intraflagellar transport 22 homolog (Chlamydomonas) Neighboring gene uncharacterized LOC103908733 Neighboring gene finTRIM family, member 83

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. ftr82 is necessary for hair cell morphogenesis and auditory function during zebrafish development. Yin G, et al. J Genet Genomics, 2023 Feb. PMID 36464225
  2. Negative regulation of the interferon response by finTRIM82 in the orange spotted grouper. Lv S, et al. Fish Shellfish Immunol, 2019 May. PMID 30853655
  3. Analysis of the expression patterns of the novel large multigene TRIM gene family (finTRIM) in zebrafish. Luo K, et al. Fish Shellfish Immunol, 2017 Jul. PMID 28461211
  4. Bioinformatics and expression analysis of finTRIM genes in grass carp, Ctenopharyngodon idella. Luo K, et al. Fish Shellfish Immunol, 2017 Jul. PMID 28476675
  5. FTR33, a member of fish-specific TRIM (finTRIM) subfamily, regulates negatively type I IFN antiviral immunity in zebrafish. Huang L, et al. Dev Comp Immunol, 2023 May. PMID 36801427

See all (17) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. ftr82 is necessary for hair cell morphogenesis and auditory function during zebrafish development.
    Title: ftr82 is necessary for hair cell morphogenesis and auditory function during zebrafish development.
  2. ftr82 is a vascular gene that plays an important role for vascular development in zebrafish.
    Title: Ftr82 Is Critical for Vascular Patterning during Zebrafish Development.
Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Markers

Homology

Clone Names

  • MGC153276

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within vasculature development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
finTRIM family, member 82

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001075103.1 → NP_001068571.1  finTRIM family, member 82

    See identical proteins and their annotated locations for NP_001068571.1

    Status: PROVISIONAL

    Source sequence(s)
    BC124299
    UniProtKB/TrEMBL
    Q08CC1
    Related
    ENSDARP00000007384.7, ENSDART00000016758.8
    Conserved Domains (4) summary
    pfam00643
    Location:148 → 186
    zf-B_box; B-box zinc finger
    pfam13863
    Location:190 → 295
    DUF4200; Domain of unknown function (DUF4200)
    pfam15227
    Location:12 → 54
    zf-C3HC4_4; zinc finger of C3HC4-type, RING
    cd16040
    Location:395 → 570
    SPRY_PRY_SNTX; Stonustoxin subunit alpha or SNTX subunit alpha

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007116.7 Reference GRCz11 Primary Assembly

    Range
    30707129..30715229 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools