U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

PGDP1 phosphogluconate dehydrogenase pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 342705, updated on 12-Sep-2024

Summary

Official Symbol
PGDP1provided by HGNC
Official Full Name
phosphogluconate dehydrogenase pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:8892
See related
Ensembl:ENSG00000265273 AllianceGenome:HGNC:8892
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
PGDL1
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Location:
18q12.1
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 18 NC_000018.10 (31962129..31963716)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 18 NC_060942.1 (32152496..32154083)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 18 NC_000018.9 (29542092..29543679)

Chromosome 18 - NC_000018.10Genomic Context describing neighboring genes Neighboring gene trafficking protein particle complex subunit 8 Neighboring gene family with sequence similarity 76 member A pseudogene Neighboring gene MPRA-validated peak3104 silencer Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:29521986-29522764 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13208 Neighboring gene RNA, U6 small nuclear 1050, pseudogene Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr18:29526223-29526906 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr18:29526907-29527590 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9387 Neighboring gene epsin 2 pseudogene Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr18:29598110-29598982 Neighboring gene H3K27ac hESC enhancer GRCh37_chr18:29598983-29599855 Neighboring gene ring finger protein 125 Neighboring gene high mobility group nucleosomal binding domain 2 pseudogene 44

Genomic regions, transcripts, and products

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_022489.1 

    Range
    101..1688
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000018.10 Reference GRCh38.p14 Primary Assembly

    Range
    31962129..31963716
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060942.1 Alternate T2T-CHM13v2.0

    Range
    32152496..32154083
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)