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CCDC144CP coiled-coil domain containing 144C, pseudogene [ Homo sapiens (human) ]

Gene ID: 348254, updated on 17-Jun-2024

Summary

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Official Symbol
CCDC144CPprovided by HGNC
Official Full Name
coiled-coil domain containing 144C, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:29073
See related
AllianceGenome:HGNC:29073
Gene type
pseudo
RefSeq status
PROVISIONAL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CCDC144C
Expression
Broad expression in testis (RPKM 7.0), placenta (RPKM 2.0) and 15 other tissues See more
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Genomic context

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See CCDC144CP in Genome Data Viewer
Location:
17p11.2
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (20321174..20402191)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (20269840..20350841)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (20224487..20305504)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene sperm antigen with calponin homology and coiled-coil domains 1 Neighboring gene ReSE screen-validated silencer GRCh37_chr17:20039526-20039742 Neighboring gene RNA, U6 small nuclear 258, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:20046676-20047184 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8306 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8307 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8308 Neighboring gene Sharpr-MPRA regulatory region 374 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:20135138-20135638 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:20184836-20185336 Neighboring gene RNA, U6 small nuclear 1057, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:20218551-20219051 Neighboring gene RNA, U6 small nuclear 467, pseudogene Neighboring gene UPF3A pseudogene 2 Neighboring gene ubiquitin specific peptidase 32 pseudogene 3 Neighboring gene signal recognition particle 68 pseudogene 3 Neighboring gene family with sequence similarity 106 member B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Structure and evolution of the Smith-Magenis syndrome repeat gene clusters, SMS-REPs. Park SS, et al. Genome Res, 2002 May. PMID 11997339, Free PMC Article
  2. VIRMA mediates preferential m(6)A mRNA methylation in 3'UTR and near stop codon and associates with alternative polyadenylation. Yue Y, et al. Cell Discov, 2018. PMID 29507755, Free PMC Article
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Other Names

  • coiled-coil domain containing 144 pseudogene

Clone Names

  • KIAA0565

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_023380.1 RNA Sequence

    Status: PROVISIONAL

    Source sequence(s)
    AC008088, AC015818, AL162090, AL162091, DA321951, DV080283, DV080284

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

    Range
    20321174..20402191
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060941.1 Alternate T2T-CHM13v2.0

    Range
    20269840..20350841
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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