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Dcakd dephospho-CoA kinase domain containing [ Rattus norvegicus (Norway rat) ]

Gene ID: 360639, updated on 28-Oct-2024

Summary

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Official Symbol
Dcakdprovided by RGD
Official Full Name
dephospho-CoA kinase domain containingprovided by RGD
Primary source
RGD:1359211
See related
EnsemblRapid:ENSRNOG00000021682 AllianceGenome:RGD:1359211
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to enable dephospho-CoA kinase activity. Predicted to be involved in coenzyme A biosynthetic process. Orthologous to human DCAKD (dephospho-CoA kinase domain containing). [provided by Alliance of Genome Resources, Oct 2024]
Expression
Biased expression in Kidney (RPKM 56.2), Adrenal (RPKM 54.3) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Dcakd in Genome Data Viewer
Location:
10q32.1
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 10 NC_086028.1 (88457829..88489011, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 10 NC_051345.1 (87957738..87989002, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (91095601..91126733, complement)

Chromosome 10 - NC_086028.1Genomic Context describing neighboring genes Neighboring gene ribosomal protein L22 like 4 Neighboring gene complement C1q like 1 Neighboring gene N-myristoyltransferase 1 Neighboring gene phospholipase C, delta 3 Neighboring gene acyl-CoA binding domain containing 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. A mitochondrial protein compendium elucidates complex I disease biology. Pagliarini DJ, et al. Cell, 2008 Jul 11. PMID 18614015, Free PMC Article
  2. Defining the membrane proteome of NK cells. Ghosh D, et al. J Mass Spectrom, 2010 Jan. PMID 19946888
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Clone Names

  • MGC94233

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables dephospho-CoA kinase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables dephospho-CoA kinase activity ISO
Inferred from Sequence Orthology
more info
  
Process Evidence Code Pubs
involved_in coenzyme A biosynthetic process IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
dephospho-CoA kinase domain-containing protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001007724.1 → NP_001007725.1  dephospho-CoA kinase domain-containing protein

    See identical proteins and their annotated locations for NP_001007725.1

    Status: PROVISIONAL

    Source sequence(s)
    BC079186
    UniProtKB/Swiss-Prot
    Q6AY55
    UniProtKB/TrEMBL
    A6HJN9
    Related
    ENSRNOP00000037891.3, ENSRNOT00000031498.5
    Conserved Domains (1) summary
    PRK00081
    Location:1 → 196
    coaE; dephospho-CoA kinase; Reviewed

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086028.1 Reference GRCr8

    Range
    88457829..88489011 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017597406.3 → XP_017452895.1  dephospho-CoA kinase domain-containing protein isoform X1

    UniProtKB/Swiss-Prot
    Q6AY55
    UniProtKB/TrEMBL
    A6HJN9
    Conserved Domains (1) summary
    PRK00081
    Location:1 → 196
    coaE; dephospho-CoA kinase; Reviewed

  2. XM_006247532.5 → XP_006247594.1  dephospho-CoA kinase domain-containing protein isoform X1

    See identical proteins and their annotated locations for XP_006247594.1

    UniProtKB/Swiss-Prot
    Q6AY55
    UniProtKB/TrEMBL
    A6HJN9
    Conserved Domains (1) summary
    PRK00081
    Location:1 → 196
    coaE; dephospho-CoA kinase; Reviewed

  3. XM_063269448.1 → XP_063125518.1  dephospho-CoA kinase domain-containing protein isoform X1

    UniProtKB/Swiss-Prot
    Q6AY55
    UniProtKB/TrEMBL
    A6HJN9

  4. XM_063269449.1 → XP_063125519.1  dephospho-CoA kinase domain-containing protein isoform X1

    UniProtKB/Swiss-Prot
    Q6AY55
    UniProtKB/TrEMBL
    A6HJN9

  5. XM_008768293.3 → XP_008766515.1  dephospho-CoA kinase domain-containing protein isoform X1

    See identical proteins and their annotated locations for XP_008766515.1

    UniProtKB/Swiss-Prot
    Q6AY55
    UniProtKB/TrEMBL
    A6HJN9
    Conserved Domains (1) summary
    PRK00081
    Location:1 → 196
    coaE; dephospho-CoA kinase; Reviewed

  6. XM_039086416.2 → XP_038942344.1  dephospho-CoA kinase domain-containing protein isoform X1

    UniProtKB/Swiss-Prot
    Q6AY55
    UniProtKB/TrEMBL
    A6HJN9
    Conserved Domains (1) summary
    PRK00081
    Location:1 → 196
    coaE; dephospho-CoA kinase; Reviewed

  7. XM_063269451.1 → XP_063125521.1  dephospho-CoA kinase domain-containing protein isoform X1

    UniProtKB/Swiss-Prot
    Q6AY55
    UniProtKB/TrEMBL
    A6HJN9
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6AY55.1 GenPept UniProtKB/Swiss-Prot:Q6AY55

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