U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

C13h1orf115 similar to human chromosome 1 open reading frame 115 [ Rattus norvegicus (Norway rat) ]

Gene ID: 360894, updated on 2-Nov-2024

Summary

Go to the top of the page Help
Official Symbol
C13h1orf115provided by RGD
Official Full Name
similar to human chromosome 1 open reading frame 115provided by RGD
Primary source
RGD:1310587
See related
AllianceGenome:RGD:1310587
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1310587
Summary
Predicted to be involved in regulation of response to drug. Predicted to be located in 9+0 non-motile cilium. Orthologous to human C1orf115 (chromosome 1 open reading frame 115). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Liver (RPKM 82.4), Kidney (RPKM 74.3) and 8 other tissues See more
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See C13h1orf115 in Genome Data Viewer
Location:
13q26
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 13 NC_086031.1 (98953841..98963577, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 13 NC_051348.1 (96422308..96432044, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 13 NC_005112.4 (102780885..102790621, complement)

Chromosome 13 - NC_086031.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134481538 Neighboring gene mitochondrial amidoxime reducing component 1 Neighboring gene mitochondrial amidoxime reducing component 2 Neighboring gene microtubule affinity regulating kinase 1 Neighboring gene uncharacterized LOC134481539

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by RGD

Process Evidence Code Pubs
involved_in regulation of response to drug ISO
Inferred from Sequence Orthology
more info
  
Component Evidence Code Pubs
located_in 9+0 non-motile cilium ISO
Inferred from Sequence Orthology
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
required for drug-induced death protein 1
Names
uncharacterized protein C1orf115 homolog

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001100857.1 → NP_001094327.1  required for drug-induced death protein 1

    See identical proteins and their annotated locations for NP_001094327.1

    Status: VALIDATED

    Source sequence(s)
    BC100157
    UniProtKB/Swiss-Prot
    Q3ZCQ0
    UniProtKB/TrEMBL
    A6JGP9
    Conserved Domains (1) summary
    pfam15828
    Location:61 → 131
    DUF4710; Domain of unknown function (DUF4710)

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086031.1 Reference GRCr8

    Range
    98953841..98963577 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q3ZCQ0.2 GenPept UniProtKB/Swiss-Prot:Q3ZCQ0

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.