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Pxdc1 PX domain containing 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 361238, updated on 17-Aug-2024

Summary

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Official Symbol
Pxdc1provided by RGD
Official Full Name
PX domain containing 1provided by RGD
Primary source
RGD:1311307
See related
EnsemblRapid:ENSRNOG00000017093 AllianceGenome:RGD:1311307
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1311307
Summary
Predicted to enable phosphatidylinositol binding activity. Orthologous to human PXDC1 (PX domain containing 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Lung (RPKM 345.0), Spleen (RPKM 207.3) and 7 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
17p12
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 17 NC_086035.1 (30481336..30510330)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 17 NC_051352.1 (30275998..30304971)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 17 NC_005116.4 (30965420..30994411)

Chromosome 17 - NC_086035.1Genomic Context describing neighboring genes Neighboring gene high mobility group box 1, pseudogene 2 Neighboring gene family with sequence similarity 50, member B Neighboring gene solute carrier family 22, member 23 Neighboring gene uncharacterized LOC134482704 Neighboring gene proteasome assembly chaperone 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC116297

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables phosphatidylinositol binding IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
PX domain-containing protein 1
Names
PX domain-containing protein C6orf145 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001025719.1 → NP_001020890.1  PX domain-containing protein 1

    See identical proteins and their annotated locations for NP_001020890.1

    Status: PROVISIONAL

    Source sequence(s)
    BC099145
    UniProtKB/Swiss-Prot
    Q4KLK8
    UniProtKB/TrEMBL
    A0A8L2UMR7, A6J7F6
    Related
    ENSRNOP00000081377.2, ENSRNOT00000108422.2
    Conserved Domains (1) summary
    cl02563
    Location:45 → 127
    PX_domain; The Phox Homology domain, a phosphoinositide binding module

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086035.1 Reference GRCr8

    Range
    30481336..30510330
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063276584.1 → XP_063132654.1  PX domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8L2UMR7

  2. XM_006253841.5 → XP_006253903.1  PX domain-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8L2UMR7
    Related
    ENSRNOP00000056888.4, ENSRNOT00000060143.4
    Conserved Domains (1) summary
    cl02563
    Location:45 → 127
    PX_domain; The Phox Homology domain, a phosphoinositide binding module

RNA

  1. XR_010058897.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q4KLK8.1 GenPept UniProtKB/Swiss-Prot:Q4KLK8

Gene LinkOut

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