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Pbdc1 polysaccharide biosynthesis domain containing 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 363485, updated on 10-Jul-2024

Summary

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Official Symbol
Pbdc1provided by RGD
Official Full Name
polysaccharide biosynthesis domain containing 1provided by RGD
Primary source
RGD:1562502
See related
EnsemblRapid:ENSRNOG00000002662 AllianceGenome:RGD:1562502
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1562502
Summary
Orthologous to human PBDC1 (polysaccharide biosynthesis domain containing 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Thymus (RPKM 67.2), Brain (RPKM 51.1) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Pbdc1 in Genome Data Viewer
Location:
Xq22
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) X NC_086039.1 (74219713..74275954)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) X NC_051356.1 (70154106..70197827)
106 previous assembly Rnor_6.0 (GCF_000001895.5) X NC_005120.4 (76042239..76092964)

Chromosome X - NC_086039.1Genomic Context describing neighboring genes Neighboring gene small ribosomal subunit protein eS8-like Neighboring gene uncharacterized LOC100912991 Neighboring gene SWI5-dependent homologous recombination repair protein 1, pseudogene 2 Neighboring gene ribosomal protein L19, pseudogene 22 Neighboring gene MAGE family member E1 Neighboring gene trafficking protein particle complex subunit 13-like Neighboring gene U6 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  

General protein information

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Preferred Names
protein PBDC1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001108818.1 → NP_001102288.1  protein PBDC1

    See identical proteins and their annotated locations for NP_001102288.1

    Status: PROVISIONAL

    Source sequence(s)
    CH473969
    UniProtKB/TrEMBL
    A0A8I6AQ18, A0A8I6GM43, A6IV25
    Related
    ENSRNOP00000003667.6, ENSRNOT00000003667.7
    Conserved Domains (1) summary
    pfam04669
    Location:35 → 158
    Polysacc_synt_4; Polysaccharide biosynthesis

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086039.1 Reference GRCr8

    Range
    74219713..74275954
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008773349.4 → XP_008771571.1  protein PBDC1 isoform X1

    UniProtKB/TrEMBL
    G3V6C3
    Conserved Domains (1) summary
    cl04661
    Location:35 → 136
    Polysacc_synt_4; Polysaccharide biosynthesis

  2. XM_063280150.1 → XP_063136220.1  protein PBDC1 isoform X2

    UniProtKB/TrEMBL
    G3V6C3
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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