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gpm6ba glycoprotein M6Ba [ Danio rerio (zebrafish) ]

Gene ID: 368225, updated on 2-Nov-2024

Summary

Official Symbol
gpm6baprovided by ZNC
Official Full Name
glycoprotein M6Baprovided by ZNC
Primary source
ZFIN:ZDB-GENE-030710-9
See related
Ensembl:ENSDARG00000005739 AllianceGenome:ZFIN:ZDB-GENE-030710-9
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:136505
Summary
Predicted to be a structural constituent of myelin sheath. Predicted to be involved in axon development and central nervous system myelination. Predicted to be located in membrane. Predicted to be active in myelin sheath and plasma membrane. Is expressed in nervous system. Orthologous to human GPM6B (glycoprotein M6B). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
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Genomic context

See gpm6ba in Genome Data Viewer
Location:
chromosome: 1
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 1 NC_007112.7 (28959723..29045423, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 1 NC_007112.6 (28155891..28241591, complement)

Chromosome 1 - NC_007112.7Genomic Context describing neighboring genes Neighboring gene PWP2 small subunit processome component Neighboring gene uncharacterized LOC137490016 Neighboring gene uncharacterized LOC137495507 Neighboring gene gem (nuclear organelle) associated protein 8 Neighboring gene cystathionine beta-synthase a

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Clone Names

  • MGC136505

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
enables structural constituent of myelin sheath IBA
Inferred from Biological aspect of Ancestor
more info
 
Process Evidence Code Pubs
involved_in axon development IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in central nervous system myelination IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
is_active_in myelin sheath IBA
Inferred from Biological aspect of Ancestor
more info
 
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
glycoprotein M6Ba
Names
DMgamma1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_203427.2NP_982251.1  glycoprotein M6Ba

    See identical proteins and their annotated locations for NP_982251.1

    Status: VALIDATED

    Source sequence(s)
    BX248514, CU570895
    UniProtKB/TrEMBL
    A0A2R8Q5Y1, F6NZC9, Q8UUT0
    Related
    ENSDARP00000026420.6, ENSDART00000019770.8
    Conserved Domains (1) summary
    pfam01275
    Location:23258
    Myelin_PLP; Myelin proteolipid protein (PLP or lipophilin)

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007112.7 Reference GRCz11 Primary Assembly

    Range
    28959723..29045423 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394488.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    46711..130313 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)