U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ORF23 helix-turn-helix domain-containing protein [ Lactobacillus phage Lc-Nu ]

Gene ID: 3726171, updated on 7-Jan-2023

Summary

Go to the top of the page Help
Gene symbol
ORF23
Gene description
helix-turn-helix domain-containing protein
Locus tag
LcNu_gp23
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Lactobacillus phage Lc-Nu (nat-host: Lactobacillus rhamnosus)
Lineage
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Lacnuvirus; Lacnuvirus LcNu
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Sequence:
NC_007501.1 (21648..21893)

NC_007501.1Genomic Context describing neighboring genes Neighboring gene endolysin Neighboring gene CI-like repressor Neighboring gene transcriptional regulator Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_007501.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. The genome of the virulent phage Lc-Nu of probiotic Lactobacillus rhamnosus, and comparative genomics with Lactobacillus casei phages. Tuohimaa A, et al. Arch Virol, 2006 May. PMID 16328134

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

General protein information

Go to the top of the page Help
Preferred Names
helix-turn-helix domain-containing protein

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_007501.1 Reference assembly

    Range
    21648..21893
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_358781.1 helix-turn-helix domain-containing protein [Lactobacillus phage Lc-Nu]

    See identical proteins and their annotated locations for YP_358781.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A8YQK9
    Conserved Domains (2) summary
    COG1396
    Location:6 → 63
    HipB; Transcriptional regulator, contains XRE-family HTH domain [Transcription]
    cd00093
    Location:6 → 57
    HTH_XRE; Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.