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D1P36_gp1 polyprotein [ Human rhinovirus A1 ]

Gene ID: 37616484, updated on 18-Aug-2023

Summary

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Gene symbol
D1P36_gp1
Gene description
polyprotein
Locus tag
D1P36_gp1
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Human rhinovirus A1 (strain: ATCC VR-1559, culture-collection: ATCC:VR-1559)
Lineage
Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales; Picornaviridae; Enterovirus; Rhinovirus A
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Genomic context

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Sequence:
NC_038311.1 (627..7100)

NC_038311.1Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_038311.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequencing and analyses of all known human rhinovirus genomes reveal structure and evolution. Palmenberg AC, et al. Science, 2009 Apr 3. PMID 19213880, Free PMC Article

GeneRIFs: Gene References Into Functions

General protein information

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Preferred Names
polyprotein
Names
1A
1B
1C
1D
2A
2B
2C
3A
3B
3C
3D

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_038311.1 Reference assembly

    Range
    627..7100
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_009505608.1 polyprotein [Human rhinovirus A1]

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    B9V432, P23008
    UniProtKB/TrEMBL
    A0A2H4UK13
    Conserved Domains (8) summary
    pfam00548
    Location:1515 → 1680
    Peptidase_C3; 3C cysteine protease (picornain 3C)
    pfam01552
    Location:999 → 1095
    Pico_P2B; Picornavirus 2B protein
    pfam02226
    Location:2 → 69
    Pico_P1A; Picornavirus coat protein (VP4)
    pfam00073
    Location:93 → 299
    Rhv; picornavirus capsid protein
    pfam00910
    Location:1214 → 1310
    RNA_helicase; RNA helicase
    pfam00947
    Location:873 → 998
    Pico_P2A; Picornavirus core protein 2A
    pfam08727
    Location:1413 → 1462
    P3A; Poliovirus 3A protein like
    cl02808
    Location:1714 → 2153
    RT_like; Reverse transcriptase (RT, RNA-dependent DNA polymerase)_like family. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, retroviruses, group ...

  2. YP_009508974.1 1A

    UniProtKB/TrEMBL
    A0MHA8, E3W0Z2, Q80SH8, Q80SK1, Q80SM3, Q80SQ7
    Conserved Domains (1) summary
    pfam02226
    Location:2 → 69
    Pico_P1A; Picornavirus coat protein (VP4)

  3. YP_009508975.1 1B

    Conserved Domains (1) summary
    pfam00073
    Location:24 → 231
    Rhv; picornavirus capsid protein

  4. YP_009508976.1 1C

    Conserved Domains (1) summary
    pfam00073
    Location:28 → 193
    Rhv; picornavirus capsid protein

  5. YP_009508977.1 1D

    UniProtKB/TrEMBL
    Q7T663, Q7T664
    Conserved Domains (1) summary
    pfam00073
    Location:47 → 199
    Rhv; picornavirus capsid protein

  6. YP_009508978.1 2A

    Conserved Domains (1) summary
    pfam00947
    Location:16 → 141
    Pico_P2A; Picornavirus core protein 2A

  7. YP_009508979.1 2B

    Conserved Domains (1) summary
    pfam01552
    Location:1 → 95
    Pico_P2B; Picornavirus 2B protein

  8. YP_009508980.1 2C

    Conserved Domains (1) summary
    pfam00910
    Location:120 → 217
    RNA_helicase; RNA helicase

  9. YP_009508981.1 3A

    Conserved Domains (1) summary
    pfam08727
    Location:12 → 46
    P3A; Poliovirus 3A protein like

  10. YP_009508982.1 3B

  11. YP_009508983.1 3C

    Conserved Domains (1) summary
    pfam00548
    Location:1 → 166
    Peptidase_C3; 3C cysteine protease (picornain 3C)

  12. YP_009508984.1 3D

    Conserved Domains (1) summary
    cl02808
    Location:17 → 456
    RT_like; Reverse transcriptase (RT, RNA-dependent DNA polymerase)_like family. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, retroviruses, group ...
Nucleotide Protein
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