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D1P52_gp1 replicase [ Caucasus prunus virus ]

Gene ID: 37616523, updated on 29-Jul-2022

Summary

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Gene symbol
D1P52_gp1
Gene description
replicase
Locus tag
D1P52_gp1
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Caucasus prunus virus (isolate: Aze204, nat-host: almond)
Lineage
Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales; Betaflexiviridae; Trivirinae; Prunevirus
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Genomic context

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Sequence:
NC_038325.1 (66..6026)

NC_038325.1Genomic Context describing neighboring genes Neighboring gene movement protein Neighboring gene coat protein Neighboring gene nucleic acid-binding protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_038325.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of New Isolates of Apricot vein clearing-associated virus and of a New Prunus-Infecting Virus: Evidence for Recombination as a Driving Force in Betaflexiviridae Evolution. Marais A, et al. PLoS One, 2015. PMID 26086395, Free PMC Article

GeneRIFs: Gene References Into Functions

General protein information

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Preferred Names
replicase

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_038325.1 Reference assembly

    Range
    66..6026
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_009505632.1 replicase [Caucasus prunus virus]

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A0H3YBN9
    Conserved Domains (5) summary
    pfam00978
    Location:1657 → 1898
    RdRP_2; RNA dependent RNA polymerase
    pfam05379
    Location:1006 → 1092
    Peptidase_C23; Carlavirus endopeptidase
    pfam01443
    Location:1194 → 1440
    Viral_helicase1; Viral (Superfamily 1) RNA helicase
    pfam01660
    Location:44 → 347
    Vmethyltransf; Viral methyltransferase
    cl21496
    Location:901 → 987
    2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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