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Gm5409 predicted pseudogene 5409 [ Mus musculus (house mouse) ]

Gene ID: 386551, updated on 8-Sep-2024

Summary

Official Symbol
Gm5409provided by MGI
Official Full Name
predicted pseudogene 5409provided by MGI
Primary source
MGI:MGI:3643903
See related
Ensembl:ENSMUSG00000059014 AllianceGenome:MGI:3643903
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Try10l; EG386551
Expression
Biased expression in small intestine adult (RPKM 72.2), spleen adult (RPKM 33.6) and 2 other tissues See more
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Genomic context

See Gm5409 in Genome Data Viewer
Location:
6 B1; 6 19.55 cM
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (41393841..41396571)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (41416907..41419637)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene T cell receptor beta chain Neighboring gene STARR-seq mESC enhancer starr_15698 Neighboring gene serine protease 3 Neighboring gene serine protease 1 (trypsin 1) like Neighboring gene STARR-seq mESC enhancer starr_15699 Neighboring gene serine protease 3 like Neighboring gene serine protease 1 (trypsin 1) Neighboring gene proline-rich polypeptide 3 pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Interactions

Products Interactant Other Gene Complex Source Pubs Description

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_006980.1 

    Range
    526113..528843
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    41393841..41396571
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001003664.2: Suppressed sequence

    Description
    NM_001003664.2: This RefSeq was removed because it is now thought that this gene is a pseudogene.