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cep97 centrosomal protein 97 [ Danio rerio (zebrafish) ]

Gene ID: 386640, updated on 2-Nov-2024

Summary

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Official Symbol
cep97provided by ZNC
Official Full Name
centrosomal protein 97provided by ZNC
Primary source
ZFIN:ZDB-GENE-031030-11
See related
Ensembl:ENSDARG00000102407 AllianceGenome:ZFIN:ZDB-GENE-031030-11
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
lrriq2; zgc:63856
Summary
Orthologous to human CEP97 (centrosomal protein 97). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See cep97 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 1 NC_007112.7 (11961..16373)
105 previous assembly GRCz10 (GCF_000002035.5) 1 NC_007112.6 (11926..16373)

Chromosome 1 - NC_007112.7Genomic Context describing neighboring genes Neighboring gene ribosomal protein L24 Neighboring gene nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta Neighboring gene embryonic ectoderm development

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Structural characteristics of zebrafish orthologs of adaptor molecules that associate with transmembrane immune receptors. Yoder JA, et al. Gene, 2007 Oct 15. PMID 17719728, Free PMC Article
  2. RNA structure replaces the need for U2AF2 in splicing. Lin CL, et al. Genome Res, 2016 Jan. PMID 26566657, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  5. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  

General protein information

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Preferred Names
centrosomal protein of 97 kDa
Names
leucine-rich repeats and IQ motif containing 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_198371.2 → NP_938185.2  centrosomal protein of 97 kDa

    Status: VALIDATED

    Source sequence(s)
    CU651657
    UniProtKB/TrEMBL
    A0A8M1PB79
    Related
    ENSDARP00000130314.1, ENSDART00000166393.1
    Conserved Domains (4) summary
    cd00116
    Location:24 → 196
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:23 → 44
    LRR_RI; leucine-rich repeat [structural motif]
    pfam12799
    Location:87 → 129
    LRR_4; Leucine Rich repeats (2 copies)
    pfam13855
    Location:87 → 143
    LRR_8; Leucine rich repeat

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007112.7 Reference GRCz11 Primary Assembly

    Range
    11961..16373
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009305058.4 → XP_009303333.3  centrosomal protein of 97 kDa isoform X1

Nucleotide Protein
Heading Accession and Version

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