scarb1 scavenger receptor class B, member 1 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: scarb1provided by ZNC
Official Full Name: scavenger receptor class B, member 1provided by ZNC
Primary source: ZFIN:ZDB-GENE-031126-1
See related: Ensembl:ENSDARG00000101557 AllianceGenome:ZFIN:ZDB-GENE-031126-1
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: cb1015
Summary: Predicted to enable lipid binding activity; low-density lipoprotein particle binding activity; and scavenger receptor activity. Acts upstream of or within regulation of developmental pigmentation and regulation of fertilization. Predicted to be located in membrane. Predicted to be active in caveola and cell surface. Is expressed in intestine; segmental plate; somite; xanthophore; and yolk syncytial layer. Orthologous to human SCARB1 (scavenger receptor class B member 1). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 10

Exon count:: 14

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	10	NC_007121.7 (44699734..44746527)
105	previous assembly	GRCz10 (GCF_000002035.5)	10	NC_007121.6 (44853122..44899915)

Chromosome 10 - NC_007121.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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Gene Ontology Provided by ZFIN

Process	Evidence Code	Pubs
acts_upstream_of_or_within regulation of developmental pigmentation	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within regulation of fertilization	IMP Inferred from Mutant Phenotype more info	PubMed

Component	Evidence Code	Pubs
located_in membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: scavenger receptor class B member 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.