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ING2-DT ING2 divergent transcript [ Homo sapiens (human) ]

Gene ID: 389247, updated on 10-Dec-2024

Summary

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Official Symbol
ING2-DTprovided by HGNC
Official Full Name
ING2 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:55723
See related
Ensembl:ENSG00000232648 AllianceGenome:HGNC:55723
Gene type
ncRNA
RefSeq status
PREDICTED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See ING2-DT in Genome Data Viewer
Location:
4q35.1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (183494737..183504515, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (186837526..186847305, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (184415890..184425668, complement)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124900823 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:184403604-184404104 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:184404105-184404605 Neighboring gene vesicle transport through interaction with t-SNAREs 1B pseudogene 2 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15828 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15829 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15830 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:184430298-184430798 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:184430799-184431299 Neighboring gene inhibitor of growth family member 2 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:184458658-184459224 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:184462205-184463000 Neighboring gene uncharacterized LOC101929996

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_033995.2 RNA Sequence

    Status: PREDICTED

    Source sequence(s)
    BC038563
    Related
    ENST00000457303.4

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    183494737..183504515 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    186837526..186847305 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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