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LOC389765 kinesin family member 27 pseudogene [ Homo sapiens (human) ]

Gene ID: 389765, updated on 17-Jun-2024

Summary

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Gene symbol
LOC389765
Gene description
kinesin family member 27 pseudogene
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in testis (RPKM 15.5), prostate (RPKM 3.6) and 25 other tissues See more
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Genomic context

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See LOC389765 in Genome Data Viewer
Location:
9q21.33
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (85806002..85842879)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (97956495..97993351)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (88420917..88457794)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101927603 Neighboring gene ATP/GTP binding carboxypeptidase 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:88215278-88216090 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:88337736-88338412 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:88338413-88339088 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28513 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19987 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19988 Neighboring gene kinesin family member 27 pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19989 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19990 Neighboring gene NANOG hESC enhancer GRCh37_chr9:88433900-88434401 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr9:88494220-88494782 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr9:88513172-88514371 Neighboring gene ribosomal L1 domain-containing protein 1-like Neighboring gene PHB1 pseudogene 7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_029410.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL353743, BC108718, DB044551

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    85806002..85842879
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    97956495..97993351
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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