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ORF1 nonstructural polyprotein [ Norovirus GII ]

Gene ID: 39105317, updated on 18-Aug-2023

Summary

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Gene symbol
ORF1
Gene description
nonstructural polyprotein
Locus tag
D9V40_gp1
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Norovirus GII (isolate: NORO_226_06_01_2016, nat-host: Homo sapiens)
Lineage
Viruses; Riboviria; Caliciviridae; Norovirus
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Genomic context

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Sequence:
NC_039477.1 (5..5104)

NC_039477.1Genomic Context describing neighboring genes Neighboring gene VP1 Neighboring gene VP2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_039477.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General protein information

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Preferred Names
nonstructural polyprotein
Names
p48
NTPase
p22
VPg
Pro
RdRp

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_039477.1 Reference assembly

    Range
    5..5104
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_009518841.1 nonstructural polyprotein [Norovirus GII]

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A220QT93, A0A2U9GMB7
    Conserved Domains (4) summary
    pfam05416
    Location:643 → 1177
    Peptidase_C37; Southampton virus-type processing peptidase
    pfam00910
    Location:493 → 595
    RNA_helicase; RNA helicase
    pfam08405
    Location:118 → 464
    Calici_PP_N; Viral polyprotein N-terminal
    cl02808
    Location:1209 → 1675
    RT_like; Reverse transcriptase (RT, RNA-dependent DNA polymerase)_like family. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, retroviruses, group ...

  2. YP_009518844.1 p48

    Conserved Domains (1) summary
    pfam08405
    Location:118 → 332
    Calici_PP_N; Viral polyprotein N-terminal

  3. YP_009518845.1 NTPase

    Conserved Domains (3) summary
    pfam00910
    Location:161 → 263
    RNA_helicase; RNA helicase
    pfam08405
    Location:1 → 132
    Calici_PP_N; Viral polyprotein N-terminal
    cl28040
    Location:311 → 366
    Peptidase_C37; Southampton virus-type processing peptidase

  4. YP_009518846.1 p22

    Conserved Domains (1) summary
    cl28040
    Location:6 → 177
    Peptidase_C37; Southampton virus-type processing peptidase

  5. YP_009518847.1 VPg

    Conserved Domains (1) summary
    cl28040
    Location:1 → 133
    Peptidase_C37; Southampton virus-type processing peptidase

  6. YP_009518848.1 Pro

    UniProtKB/TrEMBL
    G1FEL3
    Conserved Domains (1) summary
    cl28040
    Location:1 → 169
    Peptidase_C37; Southampton virus-type processing peptidase

  7. YP_009518849.1 RdRp

    UniProtKB/TrEMBL
    A0A2R3BZ08, A0A2R3BZ15, A0A2R3BZD1, A0A4D6NYK8
    Conserved Domains (1) summary
    pfam00680
    Location:29 → 458
    RdRP_1; RNA dependent RNA polymerase
Nucleotide Protein
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