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abhd14b abhydrolase domain containing 14B [ Danio rerio (zebrafish) ]

Gene ID: 393338, updated on 2-Nov-2024

Summary

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Official Symbol
abhd14bprovided by ZNC
Official Full Name
abhydrolase domain containing 14Bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-1342
See related
Ensembl:ENSDARG00000100531 AllianceGenome:ZFIN:ZDB-GENE-040426-1342
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:64031
Summary
Predicted to enable hydrolase activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be active in cytoplasm. Orthologous to human ABHD14B (abhydrolase domain containing 14B). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See abhd14b in Genome Data Viewer
Location:
chromosome: 6
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 6 NC_007117.7 (53416464..53435711)
105 previous assembly GRCz10 (GCF_000002035.5) 6 NC_007117.6 (53428276..53435333)

Chromosome 6 - NC_007117.7Genomic Context describing neighboring genes Neighboring gene si:ch211-161c3.5 Neighboring gene si:ch211-161c3.6 Neighboring gene macrophage stimulating 1 Neighboring gene calcium channel, voltage-dependent, alpha 2/delta subunit 2a Neighboring gene uncharacterized LOC137496028 Neighboring gene hyaluronidase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. miR-142-3p acts as an essential modulator of neutrophil development in zebrafish. Fan HB, et al. Blood, 2014 Aug 21. PMID 24990885
  2. An osteosarcoma zebrafish model implicates Mmp-19 and Ets-1 as well as reduced host immune response in angiogenesis and migration. Mohseny AB, et al. J Pathol, 2012 Jun. PMID 22297719
  3. Expression of Protein-Coding Gene Orthologs in Zebrafish and Mouse Inner Ear Non-sensory Supporting Cells. Giffen KP, et al. Front Neurosci, 2019. PMID 31680844, Free PMC Article
  4. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC64031

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables hydrolase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables molecular_function ND
No biological Data available
more info
  
enables transferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
involved_in positive regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
putative protein-lysine deacylase ABHD14B
NP_956661.1
XP_068077776.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_200367.1 → NP_956661.1  putative protein-lysine deacylase ABHD14B

    See identical proteins and their annotated locations for NP_956661.1

    Status: PROVISIONAL

    Source sequence(s)
    BC053212
    UniProtKB/TrEMBL
    A0A8M1PED8, Q7T387
    Related
    ENSDARP00000135162.1, ENSDART00000165067.2
    Conserved Domains (2) summary
    COG0596
    Location:23 → 212
    MhpC; Pimeloyl-ACP methyl ester carboxylesterase [Coenzyme transport and metabolism, General function prediction only]
    pfam12695
    Location:37 → 191
    Abhydrolase_5; Alpha/beta hydrolase family

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007117.7 Reference GRCz11 Primary Assembly

    Range
    53416464..53435711
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_068221675.1 → XP_068077776.1  putative protein-lysine deacylase ABHD14B isoform X1

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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