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zgc:63882 zgc:63882 [ Danio rerio (zebrafish) ]

Gene ID: 393373, updated on 17-Aug-2024

Summary

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Official Symbol
zgc:63882provided by ZNC
Official Full Name
zgc:63882provided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-1286
See related
Ensembl:ENSDARG00000004525 AllianceGenome:ZFIN:ZDB-GENE-040426-1286
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Orthologous to human C1orf35 (chromosome 1 open reading frame 35). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 2
Exon count:
8
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 2 NC_007113.7 (3044940..3065117)
105 previous assembly GRCz10 (GCF_000002035.5) 2 NC_007113.6 (3203013..3220814)

Chromosome 2 - NC_007113.7Genomic Context describing neighboring genes Neighboring gene phosphoinositide-3-kinase, regulatory subunit 3a (gamma) Neighboring gene intracisternal A particle-promoted polypeptide Neighboring gene guanylate kinase 1a Neighboring gene ADP-ribosylation factor 1 Neighboring gene wingless-type MMTV integration site family, member 3A Neighboring gene wingless-type MMTV integration site family, member 9A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC63882

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
multiple myeloma tumor-associated protein 2
Names
multiple myeloma tumor-associated protein 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_200402.2 → NP_956696.2  multiple myeloma tumor-associated protein 2

    Status: VALIDATED

    Source sequence(s)
    CABZ01075143, CABZ01075146, CT657024
    UniProtKB/TrEMBL
    A0A8M1PH48, F1QZ61
    Related
    ENSDARP00000018399.6, ENSDART00000020463.8
    Conserved Domains (1) summary
    pfam10159
    Location:9 → 84
    MMtag; Kinase phosphorylation protein

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007113.7 Reference GRCz11 Primary Assembly

    Range
    3044940..3065117
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005171131.4 → XP_005171188.1  multiple myeloma tumor-associated protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8M2BIC5
    Conserved Domains (1) summary
    pfam10159
    Location:9 → 84
    MMtag; Kinase phosphorylation protein
Nucleotide Protein Strain
Heading Accession and Version

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