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srsf10b serine and arginine rich splicing factor 10b [ Danio rerio (zebrafish) ]

Gene ID: 393505, updated on 2-Nov-2024

Summary

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Official Symbol
srsf10bprovided by ZNC
Official Full Name
serine and arginine rich splicing factor 10bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-1415
See related
Ensembl:ENSDARG00000086411 AllianceGenome:ZFIN:ZDB-GENE-040426-1415
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:65772; zgc:77372
Summary
Predicted to enable RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be active in nuclear speck. Orthologous to several human genes including SRSF10 (serine and arginine rich splicing factor 10). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
all
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Genomic context

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See srsf10b in Genome Data Viewer
Location:
chromosome: 17
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 17 NC_007128.7 (53427988..53434318)
105 previous assembly GRCz10 (GCF_000002035.5) 17 NC_007128.6 (53313052..53319382)

Chromosome 17 - NC_007128.7Genomic Context describing neighboring genes Neighboring gene solute carrier family 9 member A1b Neighboring gene fatty acid binding protein 10b, liver basic Neighboring gene gap junction protein alpha 9b Neighboring gene MYC binding protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Zebrafish rbm8a and magoh mutants reveal EJC developmental functions and new 3'UTR intron-containing NMD targets. Gangras P, et al. PLoS Genet, 2020 Jun. PMID 32502192, Free PMC Article
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Clone Names

  • MGC65772

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in nuclear speck IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
serine and arginine rich splicing factor 10b
Names
serine/arginine-rich splicing factor 10b

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_200533.2 → NP_956827.1  serine and arginine rich splicing factor 10b

    See identical proteins and their annotated locations for NP_956827.1

    Status: PROVISIONAL

    Source sequence(s)
    BC066442
    UniProtKB/TrEMBL
    Q6NYW0, Q7SZS0
    Related
    ENSDARP00000091866.3, ENSDART00000101091.5
    Conserved Domains (2) summary
    COG0724
    Location:6 → 92
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12559
    Location:10 → 93
    RRM_SRSF10; RNA recognition motif in serine/arginine-rich splicing factor 10 (SRSF10) and similar proteins

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007128.7 Reference GRCz11 Primary Assembly

    Range
    53427988..53434318
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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