pno1 partner of NOB1 homolog [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: pno1provided by ZNC
Official Full Name: partner of NOB1 homologprovided by ZNC
Primary source: ZFIN:ZDB-GENE-040426-1419
See related: Ensembl:ENSDARG00000008502 AllianceGenome:ZFIN:ZDB-GENE-040426-1419
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: zgc:65782; zgc:77265
Summary: Predicted to enable RNA binding activity. Predicted to be involved in ribosomal small subunit biogenesis. Predicted to be located in nucleolus. Predicted to be part of small-subunit processome. Predicted to be active in nucleus. Is expressed in immature eye; midbrain; myotome; retina; and somite. Orthologous to human PNO1 (partner of NOB1 homolog). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 13

Exon count:: 7

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	13	NC_007124.7 (1125187..1130059, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	13	NC_007124.6 (994896..999768, complement)

Chromosome 13 - NC_007124.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables RNA binding	IEA Inferred from Electronic Annotation more info
enables molecular_function	ND No biological Data available more info
enables nucleic acid binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in biological_process	ND No biological Data available more info
involved_in ribosomal small subunit biogenesis	ISS Inferred from Sequence or Structural Similarity more info

Component	Evidence Code	Pubs
located_in nucleolus	ISS Inferred from Sequence or Structural Similarity more info
is_active_in nucleus	IBA Inferred from Biological aspect of Ancestor more info
located_in nucleus	IEA Inferred from Electronic Annotation more info
part_of small-subunit processome	ISS Inferred from Sequence or Structural Similarity more info

General protein information

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Preferred Names: RNA-binding protein PNO1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_200548.1 → NP_956842.2 RNA-binding protein PNO1

Status: VALIDATED

Source sequence(s)

BC056522

UniProtKB/Swiss-Prot

Q6P0J4, Q6PHK2, Q6VEU3

UniProtKB/TrEMBL

F1RDN0

Related

ENSDARP00000004926.8, ENSDART00000010261.9

Conserved Domains (2) summary

smart00322
Location:177 → 229

KH; K homology RNA-binding domain

COG1094
Location:74 → 251

Krr1; rRNA processing protein Krr1/Pno1, contains KH domain [Translation, ribosomal structure and biogenesis]