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zfpl1 zinc finger protein-like 1 [ Danio rerio (zebrafish) ]

Gene ID: 393646, updated on 27-Mar-2024

Summary

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Official Symbol
zfpl1provided by ZNC
Official Full Name
zinc finger protein-like 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-1255
See related
Ensembl:ENSDARG00000103453 AllianceGenome:ZFIN:ZDB-GENE-040426-1255
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:63760
Summary
Predicted to enable metal ion binding activity. Predicted to act upstream of or within vesicle-mediated transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Is expressed in several structures, including gill; heart; integument; liver; and pleuroperitoneal region. Orthologous to human ZFPL1 (zinc finger protein like 1). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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See zfpl1 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
8
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 5 NC_007116.7 (52936176..52965077, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 5 NC_007116.6 (52290836..52319666, complement)

Chromosome 5 - NC_007116.7Genomic Context describing neighboring genes Neighboring gene scavenger receptor class B, member 2a Neighboring gene protein phosphatase with EF-hand domain 2a Neighboring gene mitochondrial ribosomal protein S30 Neighboring gene uncharacterized LOC110439830 Neighboring gene histidine triad nucleotide binding protein 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Impaired neural development in a zebrafish model for Lowe syndrome. Ramirez IB, et al. Hum Mol Genet, 2012 Apr 15. PMID 22210625, Free PMC Article
  2. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC63760

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in Golgi apparatus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
zinc finger protein-like 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_200673.1 → NP_956967.1  zinc finger protein-like 1

    See identical proteins and their annotated locations for NP_956967.1

    Status: PROVISIONAL

    Source sequence(s)
    BC058063
    UniProtKB/Swiss-Prot
    P62447
    Related
    ENSDARP00000141625.1, ENSDART00000166267.2
    Conserved Domains (1) summary
    pfam13639
    Location:51 → 100
    zf-RING_2; Ring finger domain

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007116.7 Reference GRCz11 Primary Assembly

    Range
    52936176..52965077 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005168620.4 → XP_005168677.2  zinc finger protein-like 1 isoform X1

    UniProtKB/TrEMBL
    A0A0R4IZJ5, A0A8M2BFW9
    Conserved Domains (1) summary
    pfam13639
    Location:51 → 100
    zf-RING_2; Ring finger domain
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P62447.1 GenPept UniProtKB/Swiss-Prot:P62447

Gene LinkOut

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