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viml vimentin like [ Danio rerio (zebrafish) ]

Gene ID: 393746, updated on 27-Mar-2024

Summary

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Official Symbol
vimlprovided by ZNC
Official Full Name
vimentin likeprovided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-1743
See related
Ensembl:ENSDARG00000044501 AllianceGenome:ZFIN:ZDB-GENE-040426-1743
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:73275
Summary
Predicted to be located in intermediate filament. [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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See viml in Genome Data Viewer
Location:
chromosome: 2
Exon count:
9
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 2 NC_007113.7 (50391331..50409763)
105 previous assembly GRCz10 (GCF_000002035.5) 2 NC_007113.6 (50657101..50675533)

Chromosome 2 - NC_007113.7Genomic Context describing neighboring genes Neighboring gene cullin 1a Neighboring gene contactin associated protein 2b Neighboring gene phosphodiesterase 1C, calmodulin-dependent b Neighboring gene neuronal differentiation 6b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. The zebrafish homologue of the human DYT1 dystonia gene is widely expressed in CNS neurons but non-essential for early motor system development. Sager JJ, et al. PLoS One, 2012. PMID 23028827, Free PMC Article
  2. FGF and canonical Wnt signaling cooperate to induce paraxial mesoderm from tailbud neuromesodermal progenitors through regulation of a two-step epithelial to mesenchymal transition. Goto H, et al. Development, 2017 Apr 15. PMID 28242612, Free PMC Article
  3. Integrating omics and traditional analyses to profile the synergistic toxicity of graphene oxide and triphenyl phosphate. Zhang X, et al. Environ Pollut, 2020 Aug. PMID 33618456
  4. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC73275

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
enables structural constituent of cytoskeleton IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
involved_in intermediate filament organization IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in axon IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in intermediate filament IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in intermediate filament IEA
Inferred from Electronic Annotation
more info
  
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
vimentin like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_200773.1 → NP_957067.1  vimentin like

    See identical proteins and their annotated locations for NP_957067.1

    Status: PROVISIONAL

    Source sequence(s)
    BC059604
    UniProtKB/TrEMBL
    Q6PBS2
    Related
    ENSDARP00000088880.2, ENSDART00000098108.5
    Conserved Domains (2) summary
    pfam00038
    Location:83 → 391
    Filament; Intermediate filament protein
    pfam04732
    Location:1 → 81
    Filament_head; Intermediate filament head (DNA binding) region

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007113.7 Reference GRCz11 Primary Assembly

    Range
    50391331..50409763
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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