U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LINC01002 long intergenic non-protein coding RNA 1002 [ Homo sapiens (human) ]

Gene ID: 399844, updated on 10-Dec-2024

Summary

Go to the top of the page Help
Official Symbol
LINC01002provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1002provided by HGNC
Primary source
HGNC:HGNC:38538
See related
AllianceGenome:HGNC:38538
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in testis (RPKM 21.8), bone marrow (RPKM 15.1) and 19 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LINC01002 in Genome Data Viewer
Location:
19p13.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 19 NC_000019.10 (197016..202209, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 19 NC_060943.1 (148274..153467, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (197016..202209, complement)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene septin 14 pseudogene 19 Neighboring gene capicua transcriptional repressor pseudogene 19 Neighboring gene uncharacterized LOC101928344 Neighboring gene RNA, U6 small nuclear 1076, pseudogene Neighboring gene general transcription factor IIi pseudogene 19

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. LINC01002 functions as a ceRNA to regulate FRMD8 by sponging miR-4324 for the development of COVID-19. Kong X, et al. Virol J, 2024 May 11. PMID 38734674, Free PMC Article
  2. LINC01002 Targets miR-650/FLNA Pathway to Suppress Prostate Cancer Progression. Qian L, et al. Urol Int, 2023. PMID 37040719

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. LINC01002 functions as a ceRNA to regulate FRMD8 by sponging miR-4324 for the development of COVID-19.
    Title: LINC01002 functions as a ceRNA to regulate FRMD8 by sponging miR-4324 for the development of COVID-19.
  2. LINC01002 Targets miR-650/FLNA Pathway to Suppress Prostate Cancer Progression.
    Title: LINC01002 Targets miR-650/FLNA Pathway to Suppress Prostate Cancer Progression.
Submit: New GeneRIF Correction

Phenotypes

Go to the top of the page Help

Review eQTL and phenotype association data in this region using PheGenI

Variation

Go to the top of the page Help

See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

Go to the top of the page Help

Markers

Clone Names

  • FLJ45445, FLJ56364

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_028324.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC010507, AC092299

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p14 Primary Assembly

    Range
    197016..202209 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060943.1 Alternate T2T-CHM13v2.0

    Range
    148274..153467 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001004321.2: Suppressed sequence

    Description
    NM_001004321.2: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.