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LINC02872 long intergenic non-protein coding RNA 2872 [ Homo sapiens (human) ]

Gene ID: 401535, updated on 22-Oct-2024

Summary

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Official Symbol
LINC02872provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2872provided by HGNC
Primary source
HGNC:HGNC:33817
See related
Ensembl:ENSG00000204446 AllianceGenome:HGNC:33817
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C9orf170
Expression
Low expression observed in reference dataset See more
Orthologs
all
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Genomic context

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See LINC02872 in Genome Data Viewer
Location:
9q21.33
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (87148644..87159726)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (99302311..99313380)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (89763559..89774641)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124902197 Neighboring gene NFYC pseudogene 2 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:89763162-89763670 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:89763671-89764178 Neighboring gene Sharpr-MPRA regulatory region 9207 Neighboring gene uncharacterized LOC105376126 Neighboring gene NANOG hESC enhancer GRCh37_chr9:89814775-89815276 Neighboring gene uncharacterized LOC124900285 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr9:89891312-89892511 Neighboring gene ReSE screen-validated silencer GRCh37_chr9:89951383-89951552 Neighboring gene uncharacterized LOC105376127

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
  2. Dual proteome-scale networks reveal cell-specific remodeling of the human interactome. Huttlin EL, et al. Cell, 2021 May 27. PMID 33961781, Free PMC Article
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Other Names

  • uncharacterized protein C9orf170

Clone Names

  • FLJ45537

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_161226.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL158205
    Related
    ENST00000623052.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    87148644..87159726
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    99302311..99313380
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A2RU37.1 GenPept UniProtKB/Swiss-Prot:A2RU37

Gene LinkOut

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