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RPL23P5 ribosomal protein L23 pseudogene 5 [ Homo sapiens (human) ]

Gene ID: 402120, updated on 17-Jun-2024

Summary

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Official Symbol
RPL23P5provided by HGNC
Official Full Name
ribosomal protein L23 pseudogene 5provided by HGNC
Primary source
HGNC:HGNC:35747
See related
Ensembl:ENSG00000230406 AllianceGenome:HGNC:35747
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
RPL23_3_328
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Genomic context

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See RPL23P5 in Genome Data Viewer
Location:
2q36.1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (221592433..221592931)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (222077541..222078039)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (222457153..222457651)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107985990 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr2:221700003-221701202 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr2:221719713-221720912 Neighboring gene Sharpr-MPRA regulatory region 6063 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr2:221989613-221990137 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:222033741-222034242 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:222034243-222034742 Neighboring gene NANOG hESC enhancer GRCh37_chr2:222109712-222110223 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_57049 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:222236463-222236962 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr2:222289669-222290868 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:222332747-222333353 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:222333354-222333959 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr2:222381886-222383085 Neighboring gene EPH receptor A4 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:222391836-222392336 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12364 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12365 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12366 Neighboring gene NANOG hESC enhancer GRCh37_chr2:222441193-222441705 Neighboring gene transmembrane protein 256 pseudogene 2 Neighboring gene uncharacterized LOC105373897 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:222464565-222465068 Neighboring gene uncharacterized LOC105373899 Neighboring gene uncharacterized LOC105373898 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr2:222542093-222542905 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:222657489-222658022 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr2:222760870-222762069 Neighboring gene uncharacterized LOC105373900 Neighboring gene Sharpr-MPRA regulatory region 7272 Neighboring gene LLPH pseudogene 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. Balasubramanian S, et al. Genome Biol, 2009. PMID 19123937, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_011036.2 

    Range
    89..587
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    221592433..221592931
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    222077541..222078039
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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