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gadd45gip1 growth arrest and DNA-damage-inducible, gamma interacting protein 1 [ Danio rerio (zebrafish) ]

Gene ID: 402803, updated on 14-Nov-2024

Summary

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Official Symbol
gadd45gip1provided by ZNC
Official Full Name
growth arrest and DNA-damage-inducible, gamma interacting protein 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-091204-282
See related
Ensembl:ENSDARG00000039338 AllianceGenome:ZFIN:ZDB-GENE-091204-282
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
si:dkey-194e13.6
Summary
Predicted to be located in nucleus and ribosome. Predicted to be part of ribonucleoprotein complex. Predicted to be active in mitochondrion. Orthologous to human GADD45GIP1 (GADD45G interacting protein 1). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See gadd45gip1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (14691934..14695063, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (14542134..14545253, complement)

Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene tetraspanin 34b Neighboring gene zgc:158403 Neighboring gene nuclear factor I/Xb Neighboring gene uncharacterized LOC110439336 Neighboring gene NME/NM23 nucleoside diphosphate kinase 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
  
located_in ribosome IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
growth arrest and DNA damage-inducible proteins-interacting protein 1; large ribosomal subunit protein mL64

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007114.7 Reference GRCz11 Primary Assembly

    Range
    14691934..14695063 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001345097.7 → XP_001345133.4  large ribosomal subunit protein mL64

    UniProtKB/TrEMBL
    A0A8M1PVC0
    Related
    ENSDARP00000115136.1, ENSDART00000133850.2
    Conserved Domains (1) summary
    pfam10147
    Location:20 → 238
    CR6_interact; Growth arrest and DNA-damage-inducible proteins-interacting protein 1
Nucleotide Protein Strain
Heading Accession and Version

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