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si:dkey-250d21.1 si:dkey-250d21.1 [ Danio rerio (zebrafish) ]

Gene ID: 402835, updated on 2-Nov-2024

Summary

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Official Symbol
si:dkey-250d21.1provided by ZNC
Official Full Name
si:dkey-250d21.1provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-8276
See related
AllianceGenome:ZFIN:ZDB-GENE-030131-8276
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fj64b09; wu:fj64b09
Summary
Predicted to enable DNA binding activity and metal ion binding activity. Orthologous to human THAP12 (THAP domain containing 12). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
all
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Genomic context

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See si:dkey-250d21.1 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 10 NC_007121.7 (32066330..32083578)
105 previous assembly GRCz10 (GCF_000002035.5) 10 NC_007121.6 (32122284..32140011)

Chromosome 10 - NC_007121.7Genomic Context describing neighboring genes Neighboring gene si:ch211-266i6.3 Neighboring gene THAP domain containing 12a Neighboring gene wingless-type MMTV integration site family, member 11 Neighboring gene UV radiation resistance associated gene Neighboring gene DNA ligase 1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Evolutionary Origin and Nomenclature of Vertebrate Wnt11-Family Genes. Postlethwait JH, et al. Zebrafish, 2019 Oct. PMID 31295059, Free PMC Article
  2. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article
  3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC402835; uncharacterized protein si:dkey-250d21.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007121.7 Reference GRCz11 Primary Assembly

    Range
    32066330..32083578
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002663575.7 → XP_002663621.3  uncharacterized protein si:dkey-250d21.1 isoform X1

    UniProtKB/TrEMBL
    A0A8M1RR96
    Conserved Domains (3) summary
    pfam09528
    Location:2107 → 2702
    Ehrlichia_rpt; Ehrlichia tandem repeat (Ehrlichia_rpt)
    pfam05485
    Location:4 → 88
    THAP; THAP domain
    pfam14291
    Location:814 → 908
    DUF4371; Domain of unknown function (DUF4371)

  2. XM_021479400.2 → XP_021335075.1  uncharacterized protein si:dkey-250d21.1 isoform X2

    UniProtKB/TrEMBL
    A0A8M9QL63
    Conserved Domains (5) summary
    pfam05485
    Location:5 → 86
    THAP; THAP domain
    pfam14291
    Location:772 → 908
    DUF4371; Domain of unknown function (DUF4371)
    cl26247
    Location:2235 → 2450
    DNA_pol3_delta2; DNA polymerase III, delta subunit
    cl26761
    Location:2315 → 2665
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    cl28246
    Location:2024 → 2303
    DnaJ; DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Nucleotide Protein Strain
Heading Accession and Version

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