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POLY polyprotein [ Rocio virus ]

Gene ID: 40338747, updated on 18-Aug-2023

Summary

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Gene symbol
POLY
Gene description
polyprotein
Locus tag
EXL02_gp1
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rocio virus (strain: SPH 34675)
Lineage
Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Flasuviricetes; Amarillovirales; Flaviviridae; Flavivirus; Ilheus virus
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Genomic context

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Sequence:
NC_040776.1 (93..10370)

NC_040776.1Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_040776.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Biological transmission of arboviruses: reexamination of and new insights into components, mechanisms, and unique traits as well as their evolutionary trends. Kuno G, et al. Clin Microbiol Rev, 2005 Oct. PMID 16223950, Free PMC Article

GeneRIFs: Gene References Into Functions

General protein information

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Preferred Names
polyprotein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_040776.1 Reference assembly

    Range
    93..10370
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_009553341.1 polyprotein [Rocio virus]

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    Q32ZD4
    UniProtKB/TrEMBL
    A0A291FH38
    Conserved Domains (16) summary
    cd12149
    Location:593 → 685
    Flavi_E_C; Immunoglobulin-like domain III (C-terminal domain) of Flavivirus envelope glycoprotein E
    TIGR04240
    Location:690 → 786
    flavi_E_stem; flavivirus envelope glycoprotein E, stem/anchor domain
    pfam00948
    Location:788 → 1142
    Flavi_NS1; Flavivirus non-structural Protein NS1
    pfam01002
    Location:1371 → 1497
    Flavi_NS2B; Flavivirus non-structural protein NS2B
    pfam01005
    Location:1151 → 1282
    Flavi_NS2A; Flavivirus non-structural protein NS2A
    pfam01349
    Location:2266 → 2512
    Flavi_NS4B; Flavivirus non-structural protein NS4B
    pfam01350
    Location:2124 → 2263
    Flavi_NS4A; Flavivirus non-structural protein NS4A
    pfam00949
    Location:1516 → 1664
    Peptidase_S7; Peptidase S7, Flavivirus NS3 serine protease
    cd17038
    Location:211 → 285
    Flavi_M; Flavivirus envelope glycoprotein M
    cd18806
    Location:1830 → 1974
    SF2_C_viral; C-terminal helicase domain of viral helicase
    pfam00869
    Location:288 → 584
    Flavi_glycoprot; Flavivirus glycoprotein, central and dimerization domains
    pfam00972
    Location:2774 → 3418
    Flavi_NS5; Flavivirus RNA-directed RNA polymerase
    pfam01003
    Location:6 → 118
    Flavi_capsid; Flavivirus capsid protein C
    pfam01570
    Location:146 → 201
    Flavi_propep; Flavivirus polyprotein propeptide
    pfam07652
    Location:1681 → 1828
    Flavi_DEAD; Flavivirus DEAD domain
    pfam01728
    Location:2576 → 2743
    FtsJ; FtsJ-like methyltransferase
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q32ZD4.1

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